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| Status |
Public on Mar 06, 2015 |
| Title |
Dynamic profiling of the protein life cycle in response to pathogens |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Protein profiling by Mass Spec
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
25745177 |
| Submission date |
Jul 25, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Catherine J Wu |
| Organization name |
Dana Farber Cancer Institute
|
| Lab |
Wu Lab
|
| Street address |
450 Brookline Ave.
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
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| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL18998 |
LC-MS/MS on Orbitrap Q Exactive |
|
| Samples (116)
|
| GSM1446348 |
Replicate 1, RNA-Seq, time 0 |
| GSM1446349 |
Replicate 1, RNA-Seq, Mock-stimulus, time 1h |
| GSM1446350 |
Replicate 1, RNA-Seq, Mock-stimulus, time 2h |
| GSM1446351 |
Replicate 1, RNA-Seq, Mock-stimulus, time 4h |
| GSM1446352 |
Replicate 1, RNA-Seq, Mock-stimulus, time 6h |
| GSM1446353 |
Replicate 1, RNA-Seq, Mock-stimulus, time 9h |
| GSM1446354 |
Replicate 1, RNA-Seq, Mock-stimulus, time 12h |
| GSM1446355 |
Replicate 1, RNA-Seq, LPS-stimulus, time 1h |
| GSM1446356 |
Replicate 1, RNA-Seq, LPS-stimulus, time 2h |
| GSM1446357 |
Replicate 1, RNA-Seq, LPS-stimulus, time 4h |
| GSM1446358 |
Replicate 1, RNA-Seq, LPS-stimulus, time 6h |
| GSM1446359 |
Replicate 1, RNA-Seq, LPS-stimulus, time 9h |
| GSM1446360 |
Replicate 1, RNA-Seq, LPS-stimulus, time 12h |
| GSM1446361 |
Replicate 2, RNA-Seq, time 0 |
| GSM1446362 |
Replicate 2, RNA-Seq, Mock-stimulus, time 1h |
| GSM1446363 |
Replicate 2, RNA-Seq, Mock-stimulus, time 2h |
| GSM1446364 |
Replicate 2, RNA-Seq, Mock-stimulus, time 4h |
| GSM1446365 |
Replicate 2, RNA-Seq, Mock-stimulus, time 6h |
| GSM1446366 |
Replicate 2, RNA-Seq, Mock-stimulus, time 9h |
| GSM1446367 |
Replicate 2, RNA-Seq, Mock-stimulus, time 12h |
| GSM1446368 |
Replicate 2, RNA-Seq, LPS-stimulus, time 1h |
| GSM1446369 |
Replicate 2, RNA-Seq, LPS-stimulus, time 2h |
| GSM1446370 |
Replicate 2, RNA-Seq, LPS-stimulus, time 4h |
| GSM1446371 |
Replicate 2, RNA-Seq, LPS-stimulus, time 6h |
| GSM1446372 |
Replicate 2, RNA-Seq, LPS-stimulus, time 9h |
| GSM1446373 |
Replicate 2, RNA-Seq, LPS-stimulus, time 12h |
| GSM1446461 |
Replicate 1, Medium channel SILAC, time 0 |
| GSM1446462 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 0.5h |
| GSM1446463 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 1h |
| GSM1446464 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 2h |
| GSM1446465 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 3h |
| GSM1446466 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 4h |
| GSM1446467 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 5h |
| GSM1446468 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 6h |
| GSM1446469 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 9h |
| GSM1446470 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 12h |
| GSM1446471 |
Replicate 1, Medium channel SILAC, Mock-stimulus, time 24h |
| GSM1446472 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 0.5h |
| GSM1446473 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 1h |
| GSM1446474 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 2h |
| GSM1446475 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 3h |
| GSM1446476 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 4h |
| GSM1446477 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 5h |
| GSM1446478 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 6h |
| GSM1446479 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 9h |
| GSM1446480 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 12h |
| GSM1446481 |
Replicate 1, Medium channel SILAC, LPS-stimulus, time 24h |
| GSM1446482 |
Replicate 2, Medium channel SILAC, time 0 |
| GSM1446483 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 0.5h |
| GSM1446484 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 1h |
| GSM1446485 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 2h |
| GSM1446486 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 3h |
| GSM1446487 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 4h |
| GSM1446488 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 5h |
| GSM1446489 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 6h |
| GSM1446490 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 9h |
| GSM1446491 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 12h |
| GSM1446492 |
Replicate 2, Medium channel SILAC, Mock-stimulus, time 24h |
| GSM1446493 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 0.5h |
| GSM1446494 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 1h |
| GSM1446495 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 2h |
| GSM1446496 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 3h |
| GSM1446497 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 4h |
| GSM1446498 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 5h |
| GSM1446499 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 6h |
| GSM1446500 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 9h |
| GSM1446501 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 12h |
| GSM1446502 |
Replicate 2, Medium channel SILAC, LPS-stimulus, time 24h |
| GSM1446503 |
Replicate 1, Heavy channel SILAC, time 0 |
| GSM1446504 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 0.5h |
| GSM1446505 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 1h |
| GSM1446506 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 2h |
| GSM1446507 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 3h |
| GSM1446508 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 4h |
| GSM1446509 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 5h |
| GSM1446510 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 6h |
| GSM1446511 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 9h |
| GSM1446512 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 12h |
| GSM1446513 |
Replicate 1, Heavy channel SILAC, Mock-stimulus, time 24h |
| GSM1446514 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 0.5h |
| GSM1446515 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 1h |
| GSM1446516 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 2h |
| GSM1446517 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 3h |
| GSM1446518 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 4h |
| GSM1446519 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 5h |
| GSM1446520 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 6h |
| GSM1446521 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 9h |
| GSM1446522 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 12h |
| GSM1446523 |
Replicate 1, Heavy channel SILAC, LPS-stimulus, time 24h |
| GSM1446524 |
Replicate 2, Heavy channel SILAC, time 0 |
| GSM1446525 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 0.5h |
| GSM1446526 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 1h |
| GSM1446527 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 2h |
| GSM1446528 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 3h |
| GSM1446529 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 4h |
| GSM1446530 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 5h |
| GSM1446531 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 6h |
| GSM1446532 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 9h |
| GSM1446533 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 12h |
| GSM1446534 |
Replicate 2, Heavy channel SILAC, Mock-stimulus, time 24h |
| GSM1446535 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 0.5h |
| GSM1446536 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 1h |
| GSM1446537 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 2h |
| GSM1446538 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 3h |
| GSM1446539 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 4h |
| GSM1446540 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 5h |
| GSM1446541 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 6h |
| GSM1446542 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 9h |
| GSM1446543 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 12h |
| GSM1446544 |
Replicate 2, Heavy channel SILAC, LPS-stimulus, time 24h |
| GSM1446545 |
Replicate 1, Unlabeled, Baseline, AspN Peptide Library Protocol |
| GSM1446546 |
Replicate 2, Unlabeled, Baseline, AspN Peptide Library Protocol |
| GSM1446547 |
Replicate 1, Unlabeled, Baseline, LysN Peptide Library Protocol |
| GSM1446548 |
Replicate 2, Unlabeled, Baseline, LysN Peptide Library Protocol |
| GSM1554684 |
Replicate 1, Ribosomal footprinting, resting DCs |
| GSM1554685 |
Replicate 2, Ribosomal footprinting, resting DCs |
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| This SuperSeries is composed of the following SubSeries: |
| GSE59784 |
Dynamic profiling of the protein life cycle in response to pathogens (RNA-seq) |
| GSE59792 |
Dynamic profiling of the protein life cycle in response to pathogens (protein) |
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| Relations |
| BioProject |
PRJNA256211 |
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