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Series GSE60686 Query DataSets for GSE60686
Status Public on Mar 08, 2016
Title Genome wide analysis of binding of Polyhomeotic and polymerization defective Polyhomeotic in Drosophila S2 cells
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary To understand the role of the conserved Sterile Alpha Motif of the Polycomb Group protein Polyhomeotic, the genome wide distribution of wild type and polymerization defective Polyhomeotic containing mutations in the SAM domain was determined by ChIP-SEQ.
 
Overall design ChIP-seq Identification of polyhomeotic wild type (PH-WT) and mutant (PH-ML) binding sites.
 
Citation(s) 26759081
Submission date Aug 22, 2014
Last update date May 15, 2019
Contact name Nicole Francis
E-mail(s) nicole.francis@ircm.qc.ca
Organization name Université de Montréal
Department Département de biochimie et medécine moléculaire
Lab Institut de recherches cliniques de Montréal
Street address 110, avenue des Pins Ouest
City Montréal
State/province Quebec
ZIP/Postal code H2W 1R7
Country Canada
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (10)
GSM1485019 PH-WT ChIP-seq (PH-WT_Chip_Rep1)
GSM1485020 PH-WT ChIP-seq (PH-WT_Chip_Rep2)
GSM1485021 PH-ML ChIP-seq (PH-ML_Chip_Rep1)
Relations
BioProject PRJNA259244
SRA SRP045717

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE60686_RAW.tar 60.1 Mb (http)(custom) TAR (of BW)
GSE60686_S_RPKM.txt.gz 460.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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