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Series GSE61553 Query DataSets for GSE61553
Status Public on Feb 04, 2015
Title Transcription profiling of a S96xSK1 yeast cross and its pool of spores.
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Other
Summary To dissect local regulation into cis and trans contribution, we measured allelic differential expression in a hybrid cross of two yeast strains and compared it against allelic differential expression in a pool of spores of the same cross.
 
Overall design RNA- and DNA-seq of a diploid S. cerevisiae hybrid and its haploid spores.
 
Contributor(s) Bader DM, Gagneur J
Citation(s) 25634765
Submission date Sep 18, 2014
Last update date May 15, 2019
Contact name Daniel Magnus Bader
E-mail(s) baderd@genzentrum.lmu.de
Organization name Ludwig-Maximilians-University
Department Gene Center
Lab Gagneurlab
Street address Feodor-Lynen Str 25
City Munich
ZIP/Postal code 81377
Country Germany
 
Platforms (1)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
Samples (8)
GSM1508098 RNA seq of hybrid A
GSM1508099 RNA seq of hybrid B
GSM1508100 RNA seq of spore pool A
Relations
BioProject PRJNA263283
SRA SRP048715

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE61553_RAW.tar 1.6 Mb (http)(custom) TAR (of BED)
GSE61553_raw_counts_hybridSK_byBam.txt.gz 336.6 Kb (ftp)(http) TXT
GSE61553_xu2009_nature07728-s2_annotations.txt.gz 126.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data are available on Series record
Processed data provided as supplementary file
Raw data are available in SRA

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