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Series GSE62336 Query DataSets for GSE62336
Status Public on Jan 01, 2016
Title Methylome study in Nasopharyngeal Carcinoma (NPC)
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Aberrant methylation at the promoter region of tumor suppressors is frequently reported in NPC; however, genome-wide methylation changes have not been comprehensively investigated. Therefore, we systematically analyzed methylome data in 25 primary NPC tumors and non-tumor counterparts using Illumina HumanMethylation450 BeadChip.
 
Overall design Bisulphite converted DNA from 50 samples were hybridized to the Illumina HumanMethylation450 BeadChip. Bisulphite pyrosequencing was used as an independent method to validate the BeadChip results.
 
Contributor(s) Lung ML, Dai W
Citation(s) 25924914
Submission date Oct 15, 2014
Last update date Mar 22, 2019
Contact name Maria Li Lung
E-mail(s) mlilung@hku.hk
Phone +852 39179783
Organization name The University of Hong Kong
Department Clinical Oncology
Street address 21 Sassoon Road
City Hong Kong
ZIP/Postal code NA
Country Hong Kong
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (50)
GSM1525469 genomic DNA from control (NPC_N1)
GSM1525470 genomic DNA from NPC (NPC_T1)
GSM1525471 genomic DNA from control (NPC_N2)
Relations
BioProject PRJNA263873

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62336_RAW.tar 183.1 Mb (http)(custom) TAR
GSE62336_signals.txt.gz 206.3 Mb (ftp)(http) TXT
Processed data included within Sample table
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