|
| Status |
Public on Sep 01, 2018 |
| Title |
Transcriptome profiling of Normal and Cancerous Prostate Cells [RNA-Seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To identify differentially expressed transcripts (both annotated and unannotated) in Cancer and Normal Prostate cells global transcript abundance was assayed by RNA-Sequencing.
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| |
|
| Overall design |
RNA profiles of LNCaP and PrEC cell lines were generated by deep sequencing. Libraries were generated by Illumina TruSeq kits with PolyA+ selection (without maintaining strand information). The resultant cDNA libraries were sequenced at the Next Generation Genome Sequencing Facility (University of Western Sydney, Hawkesbury, NSW, Australia) using the Illumina HiSeq 1500 platform.
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| |
|
| Contributor(s) |
French HJ, Song JZ, Buske FA, Stirzaker C, Clark SJ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Oct 29, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Timothy John Peters |
| E-mail(s) |
t.peters@garvan.org.au
|
| Phone |
+61292958325
|
| Organization name |
Garvan Institute of Medical Research
|
| Department |
Immunology
|
| Lab |
Immunogenomics
|
| Street address |
384 Victoria St
|
| City |
Darlinghurst |
| State/province |
NSW |
| ZIP/Postal code |
2010 |
| Country |
Australia |
| |
|
| Platforms (1) |
| GPL18460 |
Illumina HiSeq 1500 (Homo sapiens) |
|
| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE62410 |
Transcriptome profiling of Normal and Cancerous Prostate Cells |
|
| Relations |
| BioProject |
PRJNA265213 |
| SRA |
SRP049376 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE62818_LNCAP_PREC.gtf.gz |
21.9 Mb |
(ftp)(http) |
GTF |
| GSE62818_cds.attr_table.txt.gz |
784.0 Kb |
(ftp)(http) |
TXT |
| GSE62818_cds.count_table.txt.gz |
562.8 Kb |
(ftp)(http) |
TXT |
| GSE62818_cds.fpkm_table.txt.gz |
568.3 Kb |
(ftp)(http) |
TXT |
| GSE62818_gencode.v19.annotation.reduced.union.gene_id.csv.gz |
280.3 Kb |
(ftp)(http) |
CSV |
| GSE62818_genes.attr_table.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
| GSE62818_genes.count_table.txt.gz |
311.2 Kb |
(ftp)(http) |
TXT |
| GSE62818_genes.fpkm_table.txt.gz |
363.3 Kb |
(ftp)(http) |
TXT |
| GSE62818_isoforms.attr_table.txt.gz |
3.8 Mb |
(ftp)(http) |
TXT |
| GSE62818_isoforms.count_table.txt.gz |
1.6 Mb |
(ftp)(http) |
TXT |
| GSE62818_isoforms.fpkm_table.txt.gz |
1.6 Mb |
(ftp)(http) |
TXT |
| GSE62818_tss_groups.attr_table.txt.gz |
1.6 Mb |
(ftp)(http) |
TXT |
| GSE62818_tss_groups.count_table.txt.gz |
857.0 Kb |
(ftp)(http) |
TXT |
| GSE62818_tss_groups.fpkm_table.txt.gz |
897.2 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
