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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 19, 2015 |
| Title |
The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Genome variation profiling by SNP array
SNP genotyping by SNP array
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Contributor(s) |
Chaligne R, Popova T, Mendoza-Parra M, Saleem MM, Gentien D, Ban K, Piolot T, Leroy O, Mariani O, Gronemeyer H, Vincent-Salomon A, Stern M, Heard E |
| Citation(s) |
25653311 |
| Submission date |
Oct 31, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Ronan Chaligné |
| E-mail(s) |
Ronan.Chaligne@curie.fr
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| Organization name |
Institut Curie
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| Lab |
Edith Heard's lab
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| Street address |
26, Rue d'Ulm
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| City |
Paris |
| ZIP/Postal code |
75248 |
| Country |
France |
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| Platforms (3) |
| GPL6801 |
[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (39)
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| This SuperSeries is composed of the following SubSeries: |
| GSE62965 |
Identification of SNPs using genomic DNA and allele specific expression using nascent RNA on snp6 array |
| GSE62966 |
Analysis of allele specific expression and its chromatin state to identify genes that are escaping X chromosome inactivation |
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| Relations |
| BioProject |
PRJNA266311 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE62907_RAW.tar |
995.7 Mb |
(http)(custom) |
TAR (of BEDGRAPH, CEL, FPKM_TRACKING, TXT) |
SRA Run Selector |
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