|
| Status |
Public on Feb 04, 2015 |
| Title |
hsa-miR-503, hsa-miR-103, and hsa-miR-494 genome wide target profiles [RNA-Seq and RIP-Seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
We constructed a genome wide target profile of hsa-miR-503, hsa-miR-103, and hsa-miR-494 by sequencing RNA isolated from Ago2 immunoprecipitations and total RNA samples following transfection of the respective miRNA in mature duplex form
|
| |
|
| Overall design |
Examination of mRNA levels in HeLa cells and Ago2 immunoprecipitations from HeLa cells following miR-503, miR-103, or miR-494 mature duplex or control siRNA transfection
|
| |
|
| Contributor(s) |
Polioudakis D, Iyer V |
| Citation(s) |
25653011 |
| Submission date |
Dec 31, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Vishy Iyer |
| E-mail(s) |
iyerlab@gmail.com
|
| Phone |
5122327833
|
| Organization name |
University of Texas at Austin
|
| Department |
Molecular Biosciences
|
| Street address |
2500 Speedway Dr. MBB 3.212
|
| City |
Austin |
| State/province |
TX |
| ZIP/Postal code |
78712 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (30)
|
|
| This SubSeries is part of SuperSeries: |
| GSE64616 |
Genome-wide hsa-miR-503, hsa-miR-103, and hsa-miR-494 target profiles |
|
| Relations |
| BioProject |
PRJNA271411 |
| SRA |
SRP051644 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE64615_Ago2_immunoprecipitation_miR-103_cuffdiff_fpkm.txt.gz |
799.9 Kb |
(ftp)(http) |
TXT |
| GSE64615_Ago2_immunoprecipitation_miR-494_cuffdiff_fpkm.txt.gz |
799.8 Kb |
(ftp)(http) |
TXT |
| GSE64615_Ago2_immunoprecipitation_miR-503_cuffdiff_fpkm.txt.gz |
801.5 Kb |
(ftp)(http) |
TXT |
| GSE64615_Ago2_immunoprecipitation_mock_cuffdiff_fpkm.txt.gz |
790.9 Kb |
(ftp)(http) |
TXT |
| GSE64615_Gene_expression_miR-103_cuffdiff_fpkm.txt.gz |
813.6 Kb |
(ftp)(http) |
TXT |
| GSE64615_Gene_expression_miR-494_cuffdiff_fpkm.txt.gz |
799.8 Kb |
(ftp)(http) |
TXT |
| GSE64615_Gene_expression_miR-503_cuffdiff_fpkm.txt.gz |
801.5 Kb |
(ftp)(http) |
TXT |
| GSE64615_Gene_expression_mock_cuffdiff_fpkm.txt.gz |
790.9 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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