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| Status |
Public on Jan 12, 2016 |
| Title |
Expression data of BRPF3 depletion from the human osteosarcoma U2OS cell line |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
The Bromo-domain and PHD-finger protein, BRPF3, forms a complex with HBO1 and regulates the initiation of DNA replication. BRPF3-dependent histone H3K14 enriched in chromatin surrounding a fraction of replication origins may play an important role in origin firing.
We used microarrays to evaluate whether replication defect due to the lack of BRPF3 is associated with transcriptional changes of replication genes.
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| Overall design |
Human osteosarcoma U2OS cells depleted for BRPF3 were used for RNA extraction and hybridization on Affymetrix microarrays. Cells were treated with either scamble siRNA (Control_1_B1) or siRNA against BPRF3 (BRPF3_B1) for 48 hours. Two samples in a biological replica set were prepared in exactly the same way and labeled as Control_1_B2 and BRPF3_B2 respectively.
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| Contributor(s) |
Groth A |
| Citation(s) |
26620551 |
| Submission date |
Jan 16, 2015 |
| Last update date |
Mar 15, 2019 |
| Contact name |
Anja Groth |
| E-mail(s) |
anja.groth@bric.ku.dk
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| Organization name |
Copenhagen University
|
| Street address |
Ole Maaløes Vej 5, DK-2200 Copenhagen N
|
| City |
Copenhagen |
| ZIP/Postal code |
2200 |
| Country |
Denmark |
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| Platforms (1) |
| GPL16686 |
[HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version] |
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| Samples (4)
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| GSM1586657 |
Cells depleted for BRPF3, biological rep2 |
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| Relations |
| BioProject |
PRJNA272819 |
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