|
| Status |
Public on Oct 01, 2015 |
| Title |
Genetic basis of transcriptome diversity in Drosophila melanogaster |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This project uses pooled poly A (+) RNA from the DGRP to derive transcript models specific to DGRP. The derived transcript models provide the basis for quantifying gene expression in the DGRP lines using genome tiling arrays.
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| |
|
| Overall design |
Pooled whole body poly A (+) RNA for females and males of the DGRP lines were barcoded, multiplexed, and sequenced on a single HiSeq 2000 lane using 100PE sequencing
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| |
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| Contributor(s) |
Carbone MA, Huang W, Mackay T |
| Citation(s) |
26483487 |
| Submission date |
Apr 01, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Wen Huang |
| E-mail(s) |
whuang.ustc@gmail.com
|
| Phone |
5173539136
|
| Organization name |
Michigan State University
|
| Department |
Animal Science
|
| Lab |
Wen Huang
|
| Street address |
474 S Shaw Ln, Anthony Hall 1205F
|
| City |
East Lansing |
| State/province |
MI |
| ZIP/Postal code |
48824 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL13304 |
Illumina HiSeq 2000 (Drosophila melanogaster) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA280097 |
| SRA |
SRP056790 |
