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Series GSE69289 Query DataSets for GSE69289
Status Public on May 13, 2016
Title H3K36 mutations promote sarcomagenesis through genome-wide remodeling of H3K36 and H3K27 methylation [ChIP-Rx]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The goal of this study is to understand the genome-wide alterations in chromatin landscape induced by a histone mutation (H3.3K36M) derived from chondroblastomas
 
Overall design Examination of 3 different histone post-translational modifications in 2 cell types.
 
Contributor(s) Lu C, Lewis PW, Jain SU
Citation(s) 27174990
Submission date May 27, 2015
Last update date May 15, 2019
Contact name Peter W Lewis
E-mail(s) pwlewis2@wisc.edu
Phone 608-316-4388
Organization name University of Wisconsin-Madison
Department Department of Biomolecular Chemistry
Lab Room 2174, Wisconsin Institute for Discovery
Street address 330 N Orchard Street
City Madison
State/province Wisconsin
ZIP/Postal code 53715
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (8)
GSM1697141 Input_DNA H3.3WT
GSM1697142 H3K36me3_ChIPseq H3.3WT
GSM1697143 H3K36me2 ChIPseq H3.3WT
This SubSeries is part of SuperSeries:
GSE69291 H3K36 mutations promote sarcomagenesis through genome-wide remodeling of H3K36 and H3K27 methylation
Relations
BioProject PRJNA285090
SRA SRP058769

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE69289_Peaks_K27me3_RxNormalizedReads.txt.gz 15.2 Kb (ftp)(http) TXT
GSE69289_Peaks_K36me2_RxNormalizedReads.txt.gz 24.7 Kb (ftp)(http) TXT
GSE69289_Peaks_K36me3_RxNormalizedReads.txt.gz 75.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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