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GEO accession:
Series GSE69336
Query DataSets for GSE69336
Status
Public on Sep 17, 2015
Title
Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in D. melanogaster
Organism
Drosophila melanogaster
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
26429969
Submission date
May 28, 2015
Last update date
May 15, 2019
Contact name
Razvan V. Chereji
E-mail(s)
razvan.chereji@nih.gov
Phone
301-435-8670
Organization name
National Institutes of Health
Department
NICHD
Lab
David J. Clark Lab
Street address
6 Center Drive, Room 2A14
City
Bethesda
State/province
Maryland
ZIP/Postal code
20892
Country
USA
Platforms (1)
GPL13304
Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (27)
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More...
GSM1694819
S2_cells_genomic_DNA_MNase_rep1
GSM1694820
S2_cells_genomic_DNA_MNase_rep2
GSM1694821
S2_cells_sonicated_genomic_DNA_rep_1
GSM1694822
S2_cells_sonicated_genomic_DNA_rep_2
GSM1694823
12h_embryo_MNase_HIGH_rep1
GSM1694824
12h_embryo_MNase_HIGH_rep2
GSM1694825
12h_embryo_MNase_LOW_rep1
GSM1694826
12h_embryo_MNase_LOW_rep2
GSM1694827
12h_embryo_MNase_HIGH_H2B_ChIP_rep1
GSM1694828
12h_embryo_MNase_HIGH_H2B_ChIP_rep2
GSM1694829
12h_embryo_MNase_HIGH_H3_ChIP_rep1
GSM1694830
12h_embryo_MNase_HIGH_H3_ChIP_rep2
GSM1694831
12h_embryo_MNase_LOW_H2B_ChIP_rep1
GSM1694832
12h_embryo_MNase_LOW_H2B_ChIP_rep2
GSM1694833
12h_embryo_MNase_LOW_H3_ChIP_rep1
GSM1694834
12h_embryo_MNase_LOW_H3_ChIP_rep2
GSM1694835
S2_cells_MNase_HIGH_1n_rep_1
GSM1694836
S2_cells_MNase_HIGH_1n_rep_2
GSM1694837
S2_cells_MNase_LOW_1n_rep_1
GSM1694838
S2_cells_MNase_LOW_1n_rep_2
GSM1694839
S2_cells_MNase_LOW_2n_rep_1
GSM1694840
S2_cells_MNase_LOW_2n_rep_2
GSM1694841
Dm_S2_cells_18C_MNase_HIGH_rep1
GSM1698086
S2_RNA_Seq_replicate_1_L001
GSM1698087
S2_RNA_Seq_replicate_1_L002
GSM1698088
S2_RNA_Seq_replicate_2_L001
GSM1698089
S2_RNA_Seq_replicate_2_L002
This SuperSeries is composed of the following SubSeries:
GSE69177
Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in D. melanogaster [MNase]
GSE69335
Genome-wide profiling of nucleosome sensitivity and chromatin accessibility to MNase in D. melanogaster [RNA-seq]
Relations
BioProject
PRJNA285242
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE69336_RAW.tar
5.5 Gb
(http)
(custom)
TAR (of BEDGRAPH)
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