|
| Status |
Public on May 17, 2017 |
| Title |
Analysis of paired primary and metastatic cell lines identifies common DNA methylation changes in melanoma metastasis. |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Using 1 melanocyte and 6 melanoma cell line (3 pair of primary and metastatic), we generated base-resolution DNA methylation maps to document DNA methylation drivers of melanoma metastasis.
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| |
|
| Overall design |
Here we generated single-nucleotide resoultion DNA methylation map of a total of 7 cell lines using Reduced Representation Bisulfite Sequencing (RRBS)
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| |
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| Contributor(s) |
Chatterjee A, Stockwell PA, Eccles MR, Ahn A, Rodger EJ |
| Citation(s) |
28030832 |
| Submission date |
Jul 08, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Aniruddha Chatterjee |
| E-mail(s) |
aniruddha.chatterjee@otago.ac.nz
|
| Phone |
+64-210701558
|
| Organization name |
University of Otago
|
| Department |
Pathology
|
| Lab |
Epigenetics and Disease
|
| Street address |
270 Great king Street
|
| City |
Dunedin |
| State/province |
Otago |
| ZIP/Postal code |
9054 |
| Country |
New Zealand |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (7)
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|
| Relations |
| BioProject |
PRJNA289192 |
| SRA |
SRP060500 |
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