|
| Status |
Public on Apr 21, 2016 |
| Title |
Total RNA profiles associated with DDX3 wild-type (WT) or R534H variant expression with or without sodium arsenite treatment [RNA-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA expression profiles are not significantly altered by DDX3 WT or R534H expression as well as by 45 minute exposure of cells to sodium arsenite.
|
| |
|
| Overall design |
Cells expressing either DDX3 WT or R534H variant were treated with or without sodium arsenite and lysed in the presence of cyclohexime. Total cellular RNAs were extracted and sequenced.
|
| |
|
| Contributor(s) |
Oh S, Cho Y |
| Citation(s) |
27058758 |
| Submission date |
Jul 11, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Sekyung Oh |
| E-mail(s) |
ohskjhmi@gmail.com
|
| Phone |
650-725-3354
|
| Organization name |
Stanford University School of Medicine
|
| Department |
Neurology and Neurological Sciences
|
| Street address |
1201 Welch Road, MSLS P224
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (12)
|
| GSM1819232 |
Rluc control total RNA-seq with sodium arsenite rep1 |
| GSM1819233 |
DDX3 WT total RNA-seq with sodium arsenite rep1 |
| GSM1819234 |
DDX3 R534H total RNA-seq with sodium arsenite rep1 |
| GSM1819235 |
Rluc control total RNA-seq rep2 |
| GSM1819236 |
DDX3 WT total RNA-seq rep2 |
| GSM1819237 |
DDX3 R534H total RNA-seq rep2 |
| GSM1819238 |
Rluc control total RNA-seq with sodium arsenite rep2 |
| GSM1819239 |
DDX3 WT total RNA-seq with sodium arsenite rep2 |
| GSM1819240 |
DDX3 R534H total RNA-seq with sodium arsenite rep2 |
|
| This SubSeries is part of SuperSeries: |
| GSE70804 |
Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment |
|
| Relations |
| BioProject |
PRJNA289568 |
| SRA |
SRP060677 |
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