NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE70870 Query DataSets for GSE70870
Status Public on Jul 14, 2015
Title Chip-seq mapping of active chromatin marks in BRD4-NUT and different NMC cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary BRD4-NUT megadomains is an order of magnitude larger than super-enhancer regions and displays a more continuously enriched profile rather than appearing as a cluster of individual peaks.
 
Overall design Chip-seq mapping of active chromatin marks in BRD4-NUT and different NMC cells
 
Contributor(s) Kharchenko P, Wang X
Citation(s) 26220994
Submission date Jul 14, 2015
Last update date May 15, 2019
Contact name Peter Kharchenko
Organization name Harvard Medical School
Department DBMI
Lab Kharchenko
Street address 10 Shattuck St.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (53)
GSM1820923 Input_797_Rep1_Mar2014
GSM1820924 Input_797_Rep2_Mar2014
GSM1820925 IP_H3K27me3_797_Mar2014
This SubSeries is part of SuperSeries:
GSE70868 The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains
Relations
BioProject PRJNA289740
SRA SRP061031

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE70870_RAW.tar 9.9 Gb (http)(custom) TAR (of TDF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap