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Series GSE71017 Query DataSets for GSE71017
Status Public on Feb 25, 2016
Title Grainyhead-like 2 (GRHL2) maintains the epithelial status of ovarian cancer through miR-200-ZEB1 regulatory networks (expression)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Epithelial ovarian cancer (EOC) is clinically heterogeneous, comprising different histological and biological subtypes. Multiple studies have implicated epithelial-mesenchymal transition (EMT), a biological process by which polarized epithelial cells convert into a mesenchymal phenotype, to contribute significantly to this molecular heterogeneity of EOC. From gene expression analyses of a collection of EMT-characterized EOC cell lines, we found that the expression of the transcription factor Grainyhead-like 2 (GRHL2) correlates with E-cadherin expression and the epithelial phenotype. EOC tumors with lower levels of GRHL2 are associated with the Mes (mesenchymal) molecular subtype and show poorer overall survival in patients. Here, we demonstrate that shRNA-mediated knockdown of GRHL2 in EOC cells with an epithelial phenotype resulted in EMT changes, with increased cell migration, invasion and motility. By ChIP-sequencing and gene expression microarray, we identified a variety of target genes regulated by GRHL2, including protein-coding and non-coding genes. Our data suggest that GRHL2 maintains the epithelial phenotype of EOC cells through the regulatory networks of miR-200b/a, ZEB1 and E-cadherin. These findings support GRHL2 as a crucial player in the molecular heterogeneity of EOC.
 
Overall design 7 samples were analyzed (shNon control in duplicates; shGRHL2 #10 in duplicates, shGRHL2 #12 in triplicates)
 
Contributor(s) Chung V, Tan T, Tan M, Wong M, Kuay K, Yang Z, Ye J, Muller J, Koh C, Guccione E, Thiery J, Huang R
Citation(s) 26887977
Submission date Jul 16, 2015
Last update date Mar 15, 2019
Contact name Tuan Zea Tan
E-mail(s) csittz@nus.edu.sg
Organization name National University of Singapore
Department Cancer Science Institute Singapore
Street address 14 Medical Drive, #11-01, Singapore
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platforms (1)
GPL16686 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]
Samples (7)
GSM1825666 OVCA429 with shNon control OV429_shNon_1
GSM1825667 OVCA429 with shNon control OV429_shNon_2
GSM1825668 OVCA429 with shGRHL2 OV429_shG210_1
This SubSeries is part of SuperSeries:
GSE71019 Grainyhead-like 2 (GRHL2) maintains the epithelial status of ovarian cancer through miR-200-ZEB1 regulatory networks
Relations
BioProject PRJNA290108

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE71017_RAW.tar 44.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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