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Series GSE72810 Query DataSets for GSE72810
Status Public on Aug 29, 2016
Title Diagnosis of childhood bacterial and viral infection using host RNA expression [validation set]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Genome-wide analysis of transcriptional profiles in children <17 years of age with bacterial or viral infections or with clinical features suggestive of infection.

 
Overall design Patients were recruited at or after presentation to hospital. Main inclusion criteria were presence of illness of sufficient severity to warrant blood tests for clinical reasons, in child aged <17 years. Blood was collected into PAX gene tubes (PreAnalytiX). Total RNA integrity was assessed using an Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA). Labeled cRNA was hybridized to Illumina Human HT-12 V3 Beadchips (Validation set). Numbers of arrays analysed in the validation set were as follows: Definite Bacterial infection (n=23), Definite Viral infection (n=28), Probable Bacterial infection (n=17), Probable Viral infection (n=7), infections of uncertain bacterial or viral aetiology (n=55), Healthy controls (n=16).
 
Citation(s) 27552617
Submission date Sep 08, 2015
Last update date Aug 16, 2018
Contact name Victoria Wright
E-mail(s) v.wright@imperial.ac.uk
Organization name Imperial College London
Department Paediatrics
Lab Wright Fleming Institute
Street address Norfolk Place
City London
ZIP/Postal code W2 1PG
Country United Kingdom
 
Platforms (1)
GPL6947 Illumina HumanHT-12 V3.0 expression beadchip
Samples (146)
GSM1872657 Definite Bacterial_01 [validation]
GSM1872658 Definite Bacterial_02 [validation]
GSM1872659 Definite Bacterial_03 [validation]
This SubSeries is part of SuperSeries:
GSE72829 Diagnosis of childhood bacterial and viral infection using host RNA expression
Relations
BioProject PRJNA295137

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72810_RAW.tar 6.2 Mb (http)(custom) TAR
GSE72810_non-normalized_controls.txt.gz 5.1 Mb (ftp)(http) TXT
GSE72810_non_normalized.txt.gz 43.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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