|
| Status |
Public on Sep 10, 2015 |
| Title |
The methylome of Alu repeats in primates |
| Organisms |
Gorilla gorilla; Pan troglodytes; Pongo pygmaeus; Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Next Generation Sequencing of Unmethylated Alu (NSUMA) interrogation of more than 130,000 individual Alus for differential methylation with concomitant analysis of copy number variations applied to the study of hypomethylation in primates.
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| |
|
| Overall design |
3 replicates of Gorilla gorilla, Pan troglodytes, Pongo pygmaeus and Homo sapiens were studied.
|
| |
|
| Contributor(s) |
Martín B, Jordà M, Lois S, Mallona I, Peinado MA |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Sep 09, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Miguel A. Peinado |
| E-mail(s) |
mpeinado@igtp.cat
|
| Organization name |
IGTP
|
| Street address |
Can Ruti Campus
|
| City |
Badalona |
| ZIP/Postal code |
08916 |
| Country |
Spain |
| |
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| Platforms (6)
|
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
| GPL9378 |
Illumina Genome Analyzer II (Pan troglodytes) |
| GPL10548 |
Illumina Genome Analyzer II (Pongo pygmaeus) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL16809 |
Illumina HiSeq 2000 (Pan troglodytes) |
| GPL20895 |
Illumina Genome Analyzer II (Gorilla gorilla) |
|
| Samples (14)
|
|
| Relations |
| BioProject |
PRJNA295234 |
| SRA |
SRP063537 |
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