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| Status |
Public on Oct 01, 2015 |
| Title |
Comparative analysis of Rtf1- and PAF1C-regulated genes |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Paf1 and Ski8 were selected as representative subunits of the Paf1 complex (PAF1C), and RNA-seq analysis was performed in triplicate to compare the genes affected by Paf1, Ski8, and Rtf1 knockdown in HeLa cells.
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| Overall design |
Total RNA was harvested from control HeLa and Ski8 knockdown cells at day 4 and from Rtf1 or Paf1 knockdown cells at day 7 and was subjected to RNA-seq in triplicates.
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| Contributor(s) |
Cao Q, Yamamoto J, Isobe T, Tateno S, Murase Y, Chen Y, Handa H, Yamaguchi Y |
| Citation(s) |
26217014, 26518638 |
| Submission date |
Sep 30, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Yuki Yamaguchi |
| E-mail(s) |
yyamaguc@bio.titech.ac.jp
|
| Organization name |
Tokyo Institute of Technology
|
| Department |
Life Science and Technology
|
| Street address |
4259 Nagatsuta
|
| City |
Yokohama |
| ZIP/Postal code |
226-8501 |
| Country |
Japan |
| |
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| Platforms (1) |
| GPL17303 |
Ion Torrent Proton (Homo sapiens) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA297458 |
| SRA |
SRP064356 |
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