|
| Status |
Public on May 10, 2017 |
| Title |
Comparative transcriptomics of the virulence regulons of enteropathogenic Escherichia coli from diverse phylogenomic lineages |
| Organisms |
Escherichia coli; Escherichia coli E110019; Escherichia coli B171; Escherichia coli O127:H6 str. E2348/69; Escherichia coli C581_05; Escherichia coli 100329; Escherichia coli 103385; Escherichia coli 300059; Escherichia coli 302053; Escherichia coli 401140; Escherichia coli 402290 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Global transcriptional analysis of eleven EPEC strains, including the most frequently studied strains used in laboratory studies investigating EPEC virulence mechanisms.
|
| |
|
| Overall design |
RNA sequencing was performed on the four EPEC prototype strains during growth in laboratory media and conditions that have been previously demonstrated to induce expression of EPEC virulence factors.
|
| |
|
| Contributor(s) |
Hazen T, Daugherty S, Shetty A, Mahurkar A, White O, Nataro J, Kaper J, Rasko D |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Oct 09, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Sean Daugherty |
| E-mail(s) |
sdaugherty@som.umaryland.edu
|
| Phone |
410-706-8012
|
| Organization name |
University of Maryland School of Medicine
|
| Department |
Institute for Genome Sciences
|
| Street address |
801 W. Baltimore St.
|
| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21201 |
| Country |
USA |
| |
|
| Platforms (11)
|
| GPL14548 |
Illumina HiSeq 2000 (Escherichia coli) |
| GPL20262 |
Illumina HiSeq 2000 (Escherichia coli O127:H6 str. E2348/69) |
| GPL21003 |
Illumina HiSeq 2000 (Escherichia coli B171) |
| GPL21004 |
Illumina HiSeq 2000 (Escherichia coli C581_05) |
| GPL21005 |
Illumina HiSeq 2000 (Escherichia coli E110019) |
| GPL21006 |
Illumina HiSeq 2000 (Escherichia coli 401140) |
| GPL21007 |
Illumina HiSeq 2000 (Escherichia coli 402290) |
| GPL21008 |
Illumina HiSeq 2000 (Escherichia coli 302053) |
| GPL21009 |
Illumina HiSeq 2000 (Escherichia coli 100329) |
| GPL21010 |
Illumina HiSeq 2000 (Escherichia coli 103385) |
| GPL21011 |
Illumina HiSeq 2000 (Escherichia coli 300059) |
|
| Samples (44)
|
|
| Relations |
| BioProject |
PRJNA298339 |
| SRA |
SRP064662 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE73885_100329_DMEM_vs_LB.txt.gz |
290.3 Kb |
(ftp)(http) |
TXT |
| GSE73885_103385_TEPEC_DMEM_vs_LB.txt.gz |
210.3 Kb |
(ftp)(http) |
TXT |
| GSE73885_300059_TEPEC_DMEM_vs_LB.txt.gz |
286.3 Kb |
(ftp)(http) |
TXT |
| GSE73885_302053_DMEM_vs_LB.txt.gz |
286.6 Kb |
(ftp)(http) |
TXT |
| GSE73885_401140_DMEM_vs_LB.txt.gz |
298.2 Kb |
(ftp)(http) |
TXT |
| GSE73885_401588_DMEM_vs_LB.txt.gz |
291.7 Kb |
(ftp)(http) |
TXT |
| GSE73885_402290_DMEM_vs_LB.txt.gz |
295.7 Kb |
(ftp)(http) |
TXT |
| GSE73885_B171_DMEM_vs_LB.txt.gz |
305.9 Kb |
(ftp)(http) |
TXT |
| GSE73885_C581_05_DMEM_vs_LB.txt.gz |
300.4 Kb |
(ftp)(http) |
TXT |
| GSE73885_E110019_DMEM_vs_LB.txt.gz |
298.9 Kb |
(ftp)(http) |
TXT |
| GSE73885_E2348_69_DMEM_vs_LB.txt.gz |
268.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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