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Series GSE74935 Query DataSets for GSE74935
Status Public on Jun 01, 2016
Title Inhibition of uPA expression by CRISPR-dCas9 DNA methyltransferases
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report the generation of CRISPR-dCas9 DNA methyltransferases to mediate targeted DNA methylation. Using the dCas9-BFP-DNMT3A and dCas9-BFP-DNMT3B methyltransferases, we have demonstrated that these two methyltransferase can mediate targeted methylation in three human genes tested: uPA, TGFBR3, and CDKN2A in human HEK293T cells. We also showed that these methyltransferases could mediate gene inhibition.
 
Overall design five samples co-transfected with five uPA sgRNAs and each of the four dCas9 fusions, or control transfection with pUC19 plasmid
 
Contributor(s) Luo Y
Citation(s) 29635374
Submission date Nov 12, 2015
Last update date Dec 25, 2019
Contact name Yonglun Luo
E-mail(s) alun@biomed.au.dk
Phone 0045-22411944
Organization name Aarhus University
Street address Wilhelm Meyers Allé 4
City aarhus
ZIP/Postal code 8000
Country Denmark
 
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (5)
GSM1937993 dCas9-BFP-DNMT1
GSM1937994 dCas9-BFP-DNMT3A
GSM1937995 dCas9-BFP-DNMT3B
Relations
BioProject PRJNA301943
SRA SRP066095

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE74935_RAW.tar 8.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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