|
| Status |
Public on Aug 31, 2016 |
| Title |
Expression data from bam and setdb1 mutant ovaries |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by array
|
| Summary |
Germline stem cell self-renewal and differentiation are required for sustained production of gamates. GSC differentiation in drosophila requires expression of setdb1 by the somatic niche, however its function is not known.
We used microarray analysis to determine what genes does setdb1 regulate to affect differentiation.
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| |
|
| Overall design |
Less than 5 day old Drosophila ovaries were selected for RNA extraction and hybridization on Affymetrix microarrays. Ovaries were selected from bam and setdb1 mutants as both of them are developmentally arrested at the same stage.
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| |
|
| Contributor(s) |
Rangan P, Chittur SV |
| Citation(s) |
27019121 |
| Submission date |
Feb 19, 2016 |
| Last update date |
May 04, 2018 |
| Contact name |
Sridar V Chittur |
| E-mail(s) |
schittur@albany.edu
|
| Phone |
518-591-7215
|
| Organization name |
SUNY-University at Albany
|
| Department |
Center for Functional Genomics
|
| Lab |
Microarray Core
|
| Street address |
One Discovery Drive, CRC 342G
|
| City |
Rensselaer |
| State/province |
NY |
| ZIP/Postal code |
12144 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL1322 |
[Drosophila_2] Affymetrix Drosophila Genome 2.0 Array |
|
| Samples (6)
|
| GSM2066442 |
bam mutant ovaries, biological replicate 1 |
| GSM2066443 |
bam mutant ovaries, biological replicate 2 |
| GSM2066444 |
bam mutant ovaries, biological replicate 3 |
| GSM2066445 |
setdb1 mutant ovaries, biological replicate 1 |
| GSM2066446 |
setdb1 mutant ovaries, biological replicate 2 |
| GSM2066447 |
setdb1 mutant ovaries, biological replicate 3 |
|
| Relations |
| BioProject |
PRJNA312580 |
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