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Series GSE78588 Query DataSets for GSE78588
Status Public on Mar 18, 2016
Title polyA mRNA RNA-seq from endothelial cell of umbilical vein (ENCSR000COZ)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary RNA-seq on human HUVEC whole cell long polyA+ RNA

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000COZ/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM2072423 polyA mRNA RNA-seq from endothelial cell of umbilical vein (ENCLB555AVK)
GSM2072424 polyA mRNA RNA-seq from endothelial cell of umbilical vein (ENCLB555AVJ)
Relations
Supersedes GSM758563

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78588_ENCFF000GQV_contigs_hg19.bigBed 23.6 Mb (ftp)(http) BIGBED
GSE78588_ENCFF000GQW_exon_quantifications_hg19.gtf.gz 6.3 Mb (ftp)(http) GTF
GSE78588_ENCFF000GQY_exon_quantifications_hg19.gtf.gz 18.4 Mb (ftp)(http) GTF
GSE78588_ENCFF000GRE_gene_quantifications_hg19.gtf.gz 1.4 Mb (ftp)(http) GTF
GSE78588_ENCFF000GRG_gene_quantifications_hg19.gtf.gz 1.5 Mb (ftp)(http) GTF
GSE78588_ENCFF000GRI_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE78588_ENCFF000GRK_splice_junctions_hg19.bigBed 10.3 Mb (ftp)(http) BIGBED
GSE78588_ENCFF000GRU_transcript_quantifications_hg19.gtf.gz 13.6 Mb (ftp)(http) GTF
GSE78588_ENCFF000GRW_transcript_quantifications_hg19.gtf.gz 1.9 Mb (ftp)(http) GTF
GSE78588_ENCFF000GRY_transcript_quantifications_hg19.gtf.gz 4.9 Mb (ftp)(http) GTF
GSE78588_ENCFF046CJF_contigs_hg19.bed.gz 15.4 Mb (ftp)(http) BED
GSE78588_ENCFF644IEK_splice_junctions_hg19.bed.gz 8.8 Mb (ftp)(http) BED
GSE78588_RAW.tar 3.5 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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