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Series GSE78592 Query DataSets for GSE78592
Status Public on Mar 18, 2016
Title polyA mRNA RNA-seq from keratinocyte (ENCSR000CPJ)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from independent growths of skin keratinocytes primary nuclear extracts, NHEK. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CPJ/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM2072432 polyA mRNA RNA-seq from keratinocyte (ENCLB555ATL)
GSM2072433 polyA mRNA RNA-seq from keratinocyte (ENCLB555ATM)
Relations
Supersedes GSM765399

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78592_ENCFF000IEN_exon_quantifications_hg19.gtf.gz 7.7 Mb (ftp)(http) GTF
GSE78592_ENCFF000IEO_contigs_hg19.bigBed 27.6 Mb (ftp)(http) BIGBED
GSE78592_ENCFF000IER_exon_quantifications_hg19.gtf.gz 18.6 Mb (ftp)(http) GTF
GSE78592_ENCFF000IEV_gene_quantifications_hg19.gtf.gz 2.2 Mb (ftp)(http) GTF
GSE78592_ENCFF000IEX_gene_quantifications_hg19.gtf.gz 2.1 Mb (ftp)(http) GTF
GSE78592_ENCFF000IEZ_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE78592_ENCFF000IFB_splice_junctions_hg19.bigBed 12.0 Mb (ftp)(http) BIGBED
GSE78592_ENCFF000IFO_transcript_quantifications_hg19.gtf.gz 2.6 Mb (ftp)(http) GTF
GSE78592_ENCFF000IFQ_transcript_quantifications_hg19.gtf.gz 4.9 Mb (ftp)(http) GTF
GSE78592_ENCFF000IFS_transcript_quantifications_hg19.gtf.gz 20.0 Mb (ftp)(http) GTF
GSE78592_ENCFF340QEN_splice_junctions_hg19.bed.gz 10.8 Mb (ftp)(http) BED
GSE78592_ENCFF734NPZ_contigs_hg19.bed.gz 19.0 Mb (ftp)(http) BED
GSE78592_RAW.tar 5.4 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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