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Series GSE78594 Query DataSets for GSE78594
Status Public on Mar 18, 2016
Title polyA mRNA RNA-seq from keratinocyte (ENCSR000CPL)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from independent growths of skin keratinocytes primary whole cells, NHEK. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CPL/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Feb 25, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (3)
GSM2072436 polyA mRNA RNA-seq from keratinocyte (ENCLB555AKK)
GSM2072437 polyA mRNA RNA-seq from keratinocyte (ENCLB555APU)
GSM2072438 polyA mRNA RNA-seq from keratinocyte (ENCLB555APT)
Relations
Supersedes GSM765401

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78594_ENCFF000HZD_contigs_hg19.bigBed 16.3 Mb (ftp)(http) BIGBED
GSE78594_ENCFF000HZE_exon_quantifications_hg19.gtf.gz 7.0 Mb (ftp)(http) GTF
GSE78594_ENCFF000HZI_exon_quantifications_hg19.gtf.gz 18.7 Mb (ftp)(http) GTF
GSE78594_ENCFF000HZS_gene_quantifications_hg19.gtf.gz 585.3 Kb (ftp)(http) GTF
GSE78594_ENCFF000HZW_gene_quantifications_hg19.gtf.gz 1.5 Mb (ftp)(http) GTF
GSE78594_ENCFF000HZY_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE78594_ENCFF000IAA_gene_quantifications_hg19.gtf.gz 1.8 Mb (ftp)(http) GTF
GSE78594_ENCFF000IAC_splice_junctions_hg19.bigBed 6.8 Mb (ftp)(http) BIGBED
GSE78594_ENCFF000IAS_transcript_quantifications_hg19.gtf.gz 8.1 Mb (ftp)(http) GTF
GSE78594_ENCFF000IAW_transcript_quantifications_hg19.gtf.gz 1.9 Mb (ftp)(http) GTF
GSE78594_ENCFF000IAY_transcript_quantifications_hg19.gtf.gz 5.0 Mb (ftp)(http) GTF
GSE78594_ENCFF000IBA_transcript_quantifications_hg19.gtf.gz 4.3 Mb (ftp)(http) GTF
GSE78594_ENCFF809RDQ_contigs_hg19.bed.gz 12.5 Mb (ftp)(http) BED
GSE78594_ENCFF811FKB_splice_junctions_hg19.bed.gz 5.4 Mb (ftp)(http) BED
GSE78594_RAW.tar 5.3 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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