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Series GSE78596

Query DataSets for GSE78596

Status

Public on Mar 18, 2016

Title

polyA depleted RNA-seq from mammary epithelial cell (ENCSR000CPU)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Expression profiling by high throughput sequencing

Summary

The libraries contained in this experiment come from mammary gland epithelial primary whole cells, HMEC isolated from independent donors. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted and DNS normalized Poly-A- RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR000CPU/

Citation(s)

22955616

BioProject

PRJNA30709

Submission date

Feb 25, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL10999

Illumina Genome Analyzer IIx (Homo sapiens)

Samples (1)

GSM2072441

polyA depleted RNA-seq from mammary epithelial cell (ENCLB555APX)

Relations

Supersedes

GSM765397

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE78596_ENCFF000GBZ_contigs_hg19.bigBed	10.6 Mb	(ftp)(http)	BIGBED
GSE78596_ENCFF000GCA_exon_quantifications_hg19.gtf.gz	1012.5 Kb	(ftp)(http)	GTF
GSE78596_ENCFF000GCC_exon_quantifications_hg19.gtf.gz	15.0 Mb	(ftp)(http)	GTF
GSE78596_ENCFF000GCE_gene_quantifications_hg19.gtf.gz	164.7 Kb	(ftp)(http)	GTF
GSE78596_ENCFF000GCG_gene_quantifications_hg19.gtf.gz	207.4 Kb	(ftp)(http)	GTF
GSE78596_ENCFF000GCI_gene_quantifications_hg19.gtf.gz	1.7 Mb	(ftp)(http)	GTF
GSE78596_ENCFF000GCK_splice_junctions_hg19.bigBed	2.3 Mb	(ftp)(http)	BIGBED
GSE78596_ENCFF000GCN_transcript_quantifications_hg19.gtf.gz	906.8 Kb	(ftp)(http)	GTF
GSE78596_ENCFF000GCP_transcript_quantifications_hg19.gtf.gz	264.3 Kb	(ftp)(http)	GTF
GSE78596_ENCFF000GCR_transcript_quantifications_hg19.gtf.gz	3.8 Mb	(ftp)(http)	GTF
GSE78596_ENCFF069LFJ_contigs_hg19.bed.gz	6.3 Mb	(ftp)(http)	BED
GSE78596_ENCFF670XFY_splice_junctions_hg19.bed.gz	1.7 Mb	(ftp)(http)	BED
GSE78596_RAW.tar	184.4 Mb	(http)(custom)	TAR (of BIGWIG, TSV, TXT)
SRA Run Selector
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record