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| Status |
Public on Aug 24, 2016 |
| Title |
Input Strategy for Improving Analysis of ChIP-exo Data and Beyond |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
27550178 |
| Submission date |
Mar 24, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Bethany Buck-Koehntop |
| E-mail(s) |
koehntop@chem.utah.edu
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| Organization name |
University of Utah
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| Department |
Chemistry
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| Street address |
315 S 1400 E, rm 2020
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| City |
Salt Lake City |
| State/province |
Utah |
| ZIP/Postal code |
84112 |
| Country |
USA |
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| Platforms (1) |
| GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
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| Samples (16)
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| GSM2098408 |
input_ChIP-exo, 2 |
| GSM2098409 |
input_ChIP-seq, 1 |
| GSM2098410 |
input_ChIP-seq, 2 |
| GSM2098411 |
input_ChIP-seq, 3 |
| GSM2098412 |
scramble_RNASeq, 1 |
| GSM2098413 |
scramble_RNASeq, 2 |
| GSM2098414 |
scramble_RNASeq, 3 |
| GSM2098415 |
siRNA1_CTCF_RNASeq, 1 |
| GSM2098416 |
siRNA1_CTCF_RNASeq, 2 |
| GSM2098417 |
siRNA1_CTCF_RNASeq, 3 |
| GSM2098418 |
siRNA2_CTCF_RNASeq, 1 |
| GSM2098419 |
siRNA2_CTCF_RNASeq, 2 |
| GSM2098420 |
siRNA2_CTCF_RNASeq, 3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE79563 |
PAtCh-Cap: input strategy for improving analysis of ChIP-exo data sets and beyond |
| GSE79564 |
Input Strategy for Improving Analysis of ChIP-exo Data and Beyond [RNA-Seq] |
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| Relations |
| BioProject |
PRJNA316188 |
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