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Series GSE8309 Query DataSets for GSE8309
Status Public on Jun 29, 2007
Title Differences found in expression of cell surface & ECM components during development of the rainbow trout ovary & testis.
Platform organisms Osmerus mordax; Oncorhynchus mykiss; Salmo salar; Coregonus clupeaformis; Oncorhynchus tshawytscha
Sample organism Oncorhynchus mykiss
Experiment type Expression profiling by array
Summary A comparison of "maturing" and "prespawn" ovarian and testicular transciptomes was performed to determine the genes that are involved in regulating gametic and accessory cell function during maturation and development of the rainbow trout gonad. To identify some fo the genes involved in these processee, total RNA was compared between three-year-old normal vs two-year-old normal (maturing) and three-year-old normal vs two-year-old precocious (prespawn) gonadal tissue.
 
Overall design Three biological replicates for both "maturing" and "prespawn" rainbow trout ovary and testis with corresponding dye flips.
Web link http://web.uvic.ca/cbr/grasp/
 
Contributor(s) von Schalburg KR, Cooper GA, Davidson WS, Leong J, Yazawa R, Koop BF
Citation Microarray analysis reveals differences in expression of cell surface and extracellular matrix components during development of the trout ovary and testis. Kristian R. von Schalburg, Glenn A. Cooper, Ryosuke Yazawa, William S. Davidson and Ben F. Koop, Comp Biochem Physiol Part D: Genomics and Proteomics. 2008;3:78-90. doi:10.1016/j.cbd.2007.10.001
Submission date Jun 27, 2007
Last update date Apr 05, 2013
Contact name Ben F Koop
E-mail(s) bkoop@uvic.ca
Phone (250) 472-4067
Organization name The University of Victoria
Department Biology
Lab Centre for Biomedical Research
Street address PO Box 3020 STN CSC
City Victoria
State/province BC
ZIP/Postal code V8W 3N5
Country Canada
 
Platforms (1)
GPL2716 GRASP 16K version 2
Samples (24)
GSM205695 Rainbow trout maturing ovary Replicate 1 microarray GB032_023
GSM205696 Rainbow trout maturing ovary Replicate 2 microarray GB032_014
GSM205697 Rainbow trout maturing ovary Replicate 3 microarray GB032_025
Relations
BioProject PRJNA101281

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8309_RAW.tar 89.8 Mb (http)(custom) TAR (of TXT)
Processed data not provided for this record
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