|
| Status |
Public on Aug 01, 2016 |
| Title |
Histone H3K4 trimethylation in rat peripheral nerve |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
ChIP-seq of H3K4me3 in rat peripheral nerve was used to identify transcription start sites associated with Schwann cell-expressed genes. The analysis was performed in injured and control nerve to identify injury-responsive changes in Schwann cells.
|
| |
|
| Overall design |
H3K4me3 ChIP samples were prepared from rat sciatic nerve at 1 day post-transection using both the distal stump of the injured nerve and the contralateral (sham) nerve.
|
| |
|
| Contributor(s) |
Ma K, Svaren J |
| Citation(s) |
27581455 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 NS075269 |
Epigenetic Regulation of Peripheral Nerve Myelination |
UNIVERSITY OF WISCONSIN MADISON |
Svaren |
|
| Submission date |
Jul 11, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
John Svaren |
| E-mail(s) |
jpsvaren@wisc.edu
|
| Organization name |
University of Wisconsin
|
| Department |
Comparative Biosciences
|
| Lab |
Waisman Center
|
| Street address |
1500 Highland Ave.
|
| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53705 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18694 |
Illumina HiSeq 2500 (Rattus norvegicus) |
|
| Samples (4)
|
| GSM2230644 |
Sciatic nerve H3K4me3 Sham ChIP-seq 1 |
| GSM2230645 |
Sciatic nerve H3K4me3 Sham ChIP-seq 2 |
| GSM2230646 |
Sciatic nerve H3K4me3 ChIP-seq 1 d post-transection 1 |
| GSM2230647 |
Sciatic nerve H3K4me3 ChIP-seq 1 d post-transection 2 |
|
| Relations |
| BioProject |
PRJNA328498 |
| SRA |
SRP078271 |
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