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Series GSE85534 Query DataSets for GSE85534
Status Public on Feb 13, 2017
Title Single Cell Transcriptome Conservation in Cryopreserved Cells and Tissues
Organisms Homo sapiens; Canis lupus familiaris; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Sample preservation method that maintains transcripts in viable single cells and so allows to disconnect time and place of sampling from subsequent processing steps.
 
Overall design Single cell transcriptomes from 1,486 fresh and conserved cells from human blood, ovarian and lung tumor xenografts, mouse colon tissue, and human, mouse and canine cell cultures.
 
Contributor(s) Rodríguez-Esteban G, Heyn H
Citation(s) 28249587
Submission date Aug 12, 2016
Last update date May 15, 2019
Contact name Gustavo Rodriguez-Esteban
E-mail(s) gustavo.rodriguez@cnag.crg.eu
Organization name Centro Nacional de Análisis Genómico
Department Development
Lab Single Cell Genomics
Street address C. Baldiri Reixac, 4; Barcelona Science Park
City Barcelona
State/province Catalonia
ZIP/Postal code 08028
Country Spain
 
Platforms (4)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (1486)
GSM2397632 HEK293_Cryo_Exp_2_406X_MSCB-065
GSM2397633 HEK293_Cryo_Exp_2_406X_MSCB-066
GSM2397634 HEK293_Cryo_Exp_2_406X_MSCB-067
Relations
BioProject PRJNA338759
SRA SRP081477

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85534_Colon_Cryo.tsv.gz 571.5 Kb (ftp)(http) TSV
GSE85534_Colon_Fresh.tsv.gz 279.6 Kb (ftp)(http) TSV
GSE85534_HEK293_Cryo_Exp_1.tsv.gz 327.2 Kb (ftp)(http) TSV
GSE85534_HEK293_Cryo_Exp_2.tsv.gz 510.4 Kb (ftp)(http) TSV
GSE85534_HEK293_Cryo_Exp_3.tsv.gz 610.8 Kb (ftp)(http) TSV
GSE85534_HEK293_Fresh_Exp_1.tsv.gz 392.4 Kb (ftp)(http) TSV
GSE85534_HEK293_Fresh_Exp_2.tsv.gz 588.9 Kb (ftp)(http) TSV
GSE85534_HEK293_Fresh_Exp_3.tsv.gz 626.7 Kb (ftp)(http) TSV
GSE85534_HEK293_Nitrogen_Exp_2.tsv.gz 445.7 Kb (ftp)(http) TSV
GSE85534_K562_Cryo_Exp_1.tsv.gz 202.4 Kb (ftp)(http) TSV
GSE85534_K562_Cryo_Exp_2.tsv.gz 571.3 Kb (ftp)(http) TSV
GSE85534_K562_Fresh_Exp_1.tsv.gz 180.0 Kb (ftp)(http) TSV
GSE85534_K562_Fresh_Exp_2.tsv.gz 609.9 Kb (ftp)(http) TSV
GSE85534_MDCK_Cryo.tsv.gz 192.6 Kb (ftp)(http) TSV
GSE85534_MDCK_Fresh.tsv.gz 263.7 Kb (ftp)(http) TSV
GSE85534_NIH3T3_Cryo.tsv.gz 255.4 Kb (ftp)(http) TSV
GSE85534_NIH3T3_Fresh.tsv.gz 302.5 Kb (ftp)(http) TSV
GSE85534_PBMC_Cryo.tsv.gz 455.1 Kb (ftp)(http) TSV
GSE85534_PBMC_Fresh.tsv.gz 480.4 Kb (ftp)(http) TSV
GSE85534_PDOX_Cryo_Exp_1.tsv.gz 515.2 Kb (ftp)(http) TSV
GSE85534_PDOX_Cryo_Exp_2.tsv.gz 880.3 Kb (ftp)(http) TSV
GSE85534_PDOX_Fresh_Exp_1.tsv.gz 732.6 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
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