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Series GSE86657 Query DataSets for GSE86657
Status Public on Oct 14, 2016
Title polyA mRNA RNA-seq from A549 (ENCSR000CON)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from the whole cell fraction of independent growths of cell line A549. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CON/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Sep 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM2308412 polyA mRNA RNA-seq from A549 (ENCLB555AUL)
GSM2308413 polyA mRNA RNA-seq from A549 (ENCLB555AUK)
Relations
Supersedes GSM758564

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE86657_ENCFF000EIR_contigs_hg19.bigBed 21.0 Mb (ftp)(http) BIGBED
GSE86657_ENCFF000EIS_exon_quantifications_hg19.gtf.gz 7.2 Mb (ftp)(http) GTF
GSE86657_ENCFF000EIU_exon_quantifications_hg19.gtf.gz 18.8 Mb (ftp)(http) GTF
GSE86657_ENCFF000EIZ_gene_quantifications_hg19.gtf.gz 1.5 Mb (ftp)(http) GTF
GSE86657_ENCFF000EJB_gene_quantifications_hg19.gtf.gz 1.6 Mb (ftp)(http) GTF
GSE86657_ENCFF000EJD_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE86657_ENCFF000EJF_splice_junctions_hg19.bigBed 11.7 Mb (ftp)(http) BIGBED
GSE86657_ENCFF000EJP_transcript_quantifications_hg19.gtf.gz 16.9 Mb (ftp)(http) GTF
GSE86657_ENCFF000EJR_transcript_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE86657_ENCFF000EJT_transcript_quantifications_hg19.gtf.gz 5.0 Mb (ftp)(http) GTF
GSE86657_ENCFF235INU_contigs_hg19.bed.gz 13.9 Mb (ftp)(http) BED
GSE86657_ENCFF983SQL_splice_junctions_hg19.bed.gz 10.1 Mb (ftp)(http) BED
GSE86657_RAW.tar 2.9 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data provided as supplementary file
Processed data are available on Series record

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