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Series GSE88960 Query DataSets for GSE88960
Status Public on Jul 30, 2017
Title Effects of IL2RA non-coding and coding sequence edits on IL2RA expression in primary human T cells.
Organism Homo sapiens
Experiment type Other
Summary We edited an intronic IL2RA enhancer or exon in primary human naïve T cells. Electroporated cells were activated and sorted on IL2RA expression over three days. Amplicon sequencing was used to assess the effects on sequence edits on IL2RA expression.
 
Overall design Cas9 ribonucleoproteins were targeted to the intronic IL2RA enhancer (SNP or CaRE4-Mix) or exon in primary human naïve T cells. Edited cells were activated with anti-CD3 and anti-CD28 antibodies and genomic DNA was extracted from unsorted, IL2RA- or IL2RA+ cells over three days. Amplicon sequencing across the cut sites was performed to assess the sequence edits in the sorted populations.
 
Contributor(s) Simeonov DR, Gowen BG
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Submission date Oct 19, 2016
Last update date May 15, 2019
Contact name Alexander Marson
E-mail(s) alexander.marson@ucsf.edu
Phone 917-848-0970
Organization name UCSF
Street address 513 Parnassus Ave, HSW 1033
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
 
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (46)
GSM2356420 ENHANCER_gSNP_Bulk_24hrs_D1
GSM2356421 ENHANCER_gSNP_IL2RA-_24hrs_D1
GSM2356422 ENHANCER_gSNP_IL2RA+_24hrs_D1
Relations
BioProject PRJNA349190
SRA SRP091792

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE88960_RAW.tar 731.2 Mb (http)(custom) TAR (of PILEUP)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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