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Series GSE90226 Query DataSets for GSE90226
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from H1-hESC (ENCSR000COV)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from the cytoplasmic fraction of independent growths of the human embryonic stem cell line H1-hESC. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000COV/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (1)
GSM2400154 polyA mRNA RNA-seq from H1-hESC (ENCLB555ATY)
Relations
Supersedes GSM758570

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90226_ENCFF000FGG_contigs_hg19.bigBed 22.9 Mb (ftp)(http) BIGBED
GSE90226_ENCFF000FGH_exon_quantifications_hg19.gtf.gz 5.8 Mb (ftp)(http) GTF
GSE90226_ENCFF000FGK_exon_quantifications_hg19.gtf.gz 16.5 Mb (ftp)(http) GTF
GSE90226_ENCFF000FGM_gene_quantifications_hg19.gtf.gz 1.0 Mb (ftp)(http) GTF
GSE90226_ENCFF000FGO_gene_quantifications_hg19.gtf.gz 949.0 Kb (ftp)(http) GTF
GSE90226_ENCFF000FGQ_gene_quantifications_hg19.gtf.gz 1.9 Mb (ftp)(http) GTF
GSE90226_ENCFF000FGS_splice_junctions_hg19.bigBed 8.0 Mb (ftp)(http) BIGBED
GSE90226_ENCFF000FGY_transcript_quantifications_hg19.gtf.gz 11.2 Mb (ftp)(http) GTF
GSE90226_ENCFF000FHA_transcript_quantifications_hg19.gtf.gz 1.4 Mb (ftp)(http) GTF
GSE90226_ENCFF000FHC_transcript_quantifications_hg19.gtf.gz 4.4 Mb (ftp)(http) GTF
GSE90226_ENCFF122THZ_contigs_hg19.bed.gz 18.3 Mb (ftp)(http) BED
GSE90226_ENCFF667JEB_splice_junctions_hg19.bed.gz 6.4 Mb (ftp)(http) BED
GSE90226_RAW.tar 1.4 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file

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