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Series GSE90228 Query DataSets for GSE90228
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from HepG2 (ENCSR000CPC)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from the nuclear fraction of independent growths of cell line HepG2. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CPC/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM2400156 polyA mRNA RNA-seq from HepG2 (ENCLB555AWM)
GSM2400157 polyA mRNA RNA-seq from HepG2 (ENCLB555AWN)
Relations
Supersedes GSM758568

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90228_ENCFF000FZM_contigs_hg19.bigBed 24.6 Mb (ftp)(http) BIGBED
GSE90228_ENCFF000FZN_exon_quantifications_hg19.gtf.gz 7.8 Mb (ftp)(http) GTF
GSE90228_ENCFF000FZP_exon_quantifications_hg19.gtf.gz 18.5 Mb (ftp)(http) GTF
GSE90228_ENCFF000FZV_gene_quantifications_hg19.gtf.gz 3.0 Mb (ftp)(http) GTF
GSE90228_ENCFF000FZX_gene_quantifications_hg19.gtf.gz 3.0 Mb (ftp)(http) GTF
GSE90228_ENCFF000FZZ_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE90228_ENCFF000GAB_splice_junctions_hg19.bigBed 11.7 Mb (ftp)(http) BIGBED
GSE90228_ENCFF000GAN_transcript_quantifications_hg19.gtf.gz 3.5 Mb (ftp)(http) GTF
GSE90228_ENCFF000GAP_transcript_quantifications_hg19.gtf.gz 21.4 Mb (ftp)(http) GTF
GSE90228_ENCFF000GAQ_transcript_quantifications_hg19.gtf.gz 4.9 Mb (ftp)(http) GTF
GSE90228_ENCFF448VVC_contigs_hg19.bed.gz 17.0 Mb (ftp)(http) BED
GSE90228_ENCFF911GMU_splice_junctions_hg19.bed.gz 10.5 Mb (ftp)(http) BED
GSE90228_RAW.tar 3.7 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file

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