NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE90230 Query DataSets for GSE90230
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from HepG2 (ENCSR000CPF)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from the cytoplasmic fraction of independent growths of cell line HepG2. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CPF/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM2400160 polyA mRNA RNA-seq from HepG2 (ENCLB555AOO)
GSM2400161 polyA mRNA RNA-seq from HepG2 (ENCLB555AOP)
Relations
Supersedes GSM758576

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90230_ENCFF000FXB_contigs_hg19.bigBed 10.6 Mb (ftp)(http) BIGBED
GSE90230_ENCFF000FXC_exon_quantifications_hg19.gtf.gz 5.7 Mb (ftp)(http) GTF
GSE90230_ENCFF000FXF_exon_quantifications_hg19.gtf.gz 18.3 Mb (ftp)(http) GTF
GSE90230_ENCFF000FXJ_gene_quantifications_hg19.gtf.gz 877.4 Kb (ftp)(http) GTF
GSE90230_ENCFF000FXL_gene_quantifications_hg19.gtf.gz 825.1 Kb (ftp)(http) GTF
GSE90230_ENCFF000FXN_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE90230_ENCFF000FXP_splice_junctions_hg19.bigBed 9.6 Mb (ftp)(http) BIGBED
GSE90230_ENCFF000FXZ_transcript_quantifications_hg19.gtf.gz 10.3 Mb (ftp)(http) GTF
GSE90230_ENCFF000FYB_transcript_quantifications_hg19.gtf.gz 1.2 Mb (ftp)(http) GTF
GSE90230_ENCFF000FYD_transcript_quantifications_hg19.gtf.gz 4.9 Mb (ftp)(http) GTF
GSE90230_ENCFF436UBV_contigs_hg19.bed.gz 7.8 Mb (ftp)(http) BED
GSE90230_ENCFF710VUO_splice_junctions_hg19.bed.gz 8.0 Mb (ftp)(http) BED
GSE90230_RAW.tar 1.8 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap