NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE90232 Query DataSets for GSE90232
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from SK-N-SH (ENCSR000CPN)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from the whole cell fraction of independent growths of cell line SK-N-SH that has been treated with retinoic acid. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CPN/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM2400164 polyA mRNA RNA-seq from SK-N-SH (ENCLB555ARW)
GSM2400165 polyA mRNA RNA-seq from SK-N-SH (ENCLB555AOG)
Relations
Supersedes GSM765395

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90232_ENCFF000IPY_contigs_hg19.bigBed 24.7 Mb (ftp)(http) BIGBED
GSE90232_ENCFF000IPZ_exon_quantifications_hg19.gtf.gz 7.8 Mb (ftp)(http) GTF
GSE90232_ENCFF000IQC_exon_quantifications_hg19.gtf.gz 18.9 Mb (ftp)(http) GTF
GSE90232_ENCFF000IQF_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE90232_ENCFF000IQH_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE90232_ENCFF000IQJ_gene_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE90232_ENCFF000IQL_splice_junctions_hg19.bigBed 12.3 Mb (ftp)(http) BIGBED
GSE90232_ENCFF000IQX_transcript_quantifications_hg19.gtf.gz 18.5 Mb (ftp)(http) GTF
GSE90232_ENCFF000IQZ_transcript_quantifications_hg19.gtf.gz 2.5 Mb (ftp)(http) GTF
GSE90232_ENCFF000IRB_transcript_quantifications_hg19.gtf.gz 5.1 Mb (ftp)(http) GTF
GSE90232_ENCFF122RED_contigs_hg19.bed.gz 16.3 Mb (ftp)(http) BED
GSE90232_ENCFF510RRB_splice_junctions_hg19.bed.gz 11.0 Mb (ftp)(http) BED
GSE90232_RAW.tar 3.5 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap