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Series GSE90255 Query DataSets for GSE90255
Status Public on Dec 07, 2016
Title polyA depleted RNA-seq from HeLa-S3 (ENCSR000CQT)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from the cytoplasmic fraction of independent growths of cell line HeLa-S3. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted and DSN normalized Poly-A- RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CQT/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (1)
GSM2400207 polyA depleted RNA-seq from HeLa-S3 (ENCLB555AOZ)
Relations
Supersedes GSM767838

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90255_ENCFF000FPB_contigs_hg19.bigBed 12.4 Mb (ftp)(http) BIGBED
GSE90255_ENCFF000FPC_exon_quantifications_hg19.gtf.gz 15.4 Mb (ftp)(http) GTF
GSE90255_ENCFF000FPE_gene_quantifications_hg19.gtf.gz 429.2 Kb (ftp)(http) GTF
GSE90255_ENCFF000FPG_gene_quantifications_hg19.gtf.gz 1.8 Mb (ftp)(http) GTF
GSE90255_ENCFF000FPI_splice_junctions_hg19.bigBed 2.6 Mb (ftp)(http) BIGBED
GSE90255_ENCFF000FPM_transcript_quantifications_hg19.gtf.gz 4.0 Mb (ftp)(http) GTF
GSE90255_ENCFF000FPN_transcript_quantifications_hg19.gtf.gz 4.0 Mb (ftp)(http) GTF
GSE90255_ENCFF598GVQ_contigs_hg19.bed.gz 8.2 Mb (ftp)(http) BED
GSE90255_ENCFF639SAX_splice_junctions_hg19.bed.gz 2.3 Mb (ftp)(http) BED
GSE90255_RAW.tar 317.2 Mb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file

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