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Series GSE90266 Query DataSets for GSE90266
Status Public on Dec 07, 2016
Title polyA mRNA RNA-seq from SK-N-SH (ENCSR000CTT)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The libraries contained in this experiment come from the whole cell fraction of independent growths of cell line SK-N-SH. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR000CTT/
 
Citation(s) 22955616
BioProject PRJNA30709
Submission date Nov 22, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM2400228 polyA mRNA RNA-seq from SK-N-SH (ENCLB555AWX)
GSM2400229 polyA mRNA RNA-seq from SK-N-SH (ENCLB555AXT)
Relations
Supersedes GSM981253

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90266_ENCFF000ILK_contigs_hg19.bigBed 27.0 Mb (ftp)(http) BIGBED
GSE90266_ENCFF000ILL_exon_quantifications_hg19.gtf.gz 15.9 Mb (ftp)(http) GTF
GSE90266_ENCFF000ILN_exon_quantifications_hg19.gtf.gz 20.1 Mb (ftp)(http) GTF
GSE90266_ENCFF000ILT_gene_quantifications_hg19.gtf.gz 1.5 Mb (ftp)(http) GTF
GSE90266_ENCFF000ILV_gene_quantifications_hg19.gtf.gz 1.8 Mb (ftp)(http) GTF
GSE90266_ENCFF000ILX_splice_junctions_hg19.bigBed 14.6 Mb (ftp)(http) BIGBED
GSE90266_ENCFF000IMI_transcript_quantifications_hg19.gtf.gz 2.0 Mb (ftp)(http) GTF
GSE90266_ENCFF000IMK_transcript_quantifications_hg19.gtf.gz 5.1 Mb (ftp)(http) GTF
GSE90266_ENCFF402FNC_contigs_hg19.bed.gz 18.7 Mb (ftp)(http) BED
GSE90266_ENCFF834FVN_splice_junctions_hg19.bed.gz 13.1 Mb (ftp)(http) BED
GSE90266_RAW.tar 2.4 Gb (http)(custom) TAR (of BIGWIG, TSV, TXT)
SRA Run SelectorHelp
Raw data provided as supplementary file
Processed data are available on Series record
Processed data provided as supplementary file

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