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Series GSE90525 Query DataSets for GSE90525
Status Public on Jun 28, 2018
Title GENERATION OF HEPATIC STELLATE CELLS BY DIRECTED DIFFERENTIATION OF HUMAN PLURIPOTENT STEM CELLS
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Hepatic stellate cells (HSC) are the main stromal cell component of the liver. In healthy liver, quiescent HSC participate in the homeostasis of extracellular matrix (ECM) and store vitamin A. Liver injury causes HSC activation, where they participate in the wound-healing response, by producing ECM components as well as cytokines involved in liver regeneration and inflammation. Moreover, HSC are the main cell type responsible for fibrosis progression. The lack of homogeneous cultures and renewable sources of human HSC has limited the studies of the role of HSC in liver injury, repair anf fibrosis. Here we report a procedure to direct the differentiation of human pluripotent stem cells (PSC) to HSC. The HSC–like population (iPS-HSC) was enriched in PDGFRβ positive cells that expressed key HSC markers. Whole genome transcriptomic analysis revealed that iPS-HSC displayed features intermediate to quiescent and activated HSC. Functional analysis demonstrated that iPS-HSC accumulated retinyl esters into lipid droplets and responded to injury mediators. Moreover, when cultured with HepaRG hepatocytes as aggregates, iPS-HSC support long-term hepatocyte metabolic function and respond to hepatocyte toxicity by activating and promoting organoid fibrogenesis.
 
Overall design The genome wide transcriptome of 3 freshly isolated iPS-HSC cells (iHSC), 3 iPS-HSC cells at passage 1 iHSC_p1), 3 iPSC samples harvested from the differentiation plate on day 0, (IPSC) and finally, 3 parental BJ1 fibroblast (hfibro) samples were assessed using Affymetrix HG-U219 genechips (Affymetrix)
 
Contributor(s) Coll M, Perea L, Lozano JJ, Sancho P
Citation(s) 30049452
Submission date Nov 25, 2016
Last update date Mar 21, 2019
Contact name Juanjo Lozano
E-mail(s) juanjo.lozano@ciberehd.org
Organization name CIBEREHD
Department Plataforma de Bioinformatica
Street address C/ Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platforms (1)
GPL13667 [HG-U219] Affymetrix Human Genome U219 Array
Samples (12)
GSM2406003 Hepatic stellate cells iHSC_1
GSM2406004 Hepatic stellate cells iHSC_2
GSM2406005 Hepatic stellate cells iHSC_3
Relations
BioProject PRJNA354958

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE90525_RAW.tar 26.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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