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| Status |
Public on Sep 24, 2017 |
| Title |
Exon array data for patient-matched primary and metastatic colorectal samples |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Samples were taken from surgically resected tumor specimens/metastases from patients with colorectal cancer. The expression profiles were determined using the Affymetrix GeneChip Human Exon 1.0 ST Array version 2.
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| Overall design |
The RMA procedure was used for normalization. We then performed further quantile normalization to the sample data from the CMSpredictor R package, and then used this classifyCMS predictor to assign CMS classes for these samples. A class was assigned if both the RF nearest and SSP nearest predictions were the same.
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| |
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| Contributor(s) |
Sieber OM |
| Citation(s) |
28625833 |
| |
| Submission date |
Dec 02, 2016 |
| Last update date |
Feb 18, 2019 |
| Contact name |
Oliver Sieber |
| Organization name |
Walter and Eliza Hall Insitute of Medical Reseach
|
| Street address |
1G Royal Parade
|
| City |
Parkville |
| State/province |
VIC |
| ZIP/Postal code |
3052 |
| Country |
Australia |
| |
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| Platforms (1) |
| GPL5175 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version] |
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| Samples (10)
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| Relations |
| BioProject |
PRJNA356046 |
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