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GEO accession:
Series GSE90895
Query DataSets for GSE90895
Status
Public on Jan 19, 2017
Title
Cooperative binding of Oct4, Sox2, and Klf4 with stage-specific transcription factors orchestrates reprogramming
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28111071
Submission date
Dec 05, 2016
Last update date
Dec 18, 2020
Contact name
Kathrin Plath
Organization name
UCLA
Department
Biological Chemistry
Lab
BSRB 390B
Street address
615 Charles E. Young Drive South
City
Los Angeles
State/province
CA
ZIP/Postal code
90095-1737
Country
USA
Platforms (1)
GPL9185
Illumina Genome Analyzer (Mus musculus)
Samples (150)
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More...
GSM2417068
MEF_ATAC-seq
GSM2417069
MEF(NODOX)_ATAC-seq
GSM2417070
48h_OSKM_ATAC-seq
GSM2417071
48h_OtetO_ATAC-seq
GSM2417072
48h_StetO_ATAC-seq
GSM2417073
48h_KpMX_ATAC-seq
GSM2417074
preiPSC#1_ATAC-seq
GSM2417075
preiPSC#2_ATAC-seq
GSM2417076
ESC_ATAC-Seq
GSM2417077
MEF_H3K4me3_ChIP-Seq
GSM2417078
48h_H3K4me3_ChIP-Seq
GSM2417079
preiPSC#1_H3K4me3_ChIP-Seq
GSM2417080
ESC_H3K4me3_ChIP-Seq
GSM2417081
MEF_H3K4me2_ChIP-Seq
GSM2417082
48h_H3K4me2_ChIP-Seq
GSM2417083
preiPSC#1_H3K4me2_ChIP-Seq
GSM2417084
ESC_H3K4me2_ChIP-Seq
GSM2417085
MEF_H3K4me1_ChIP-Seq
GSM2417086
48h_H3K4me1_ChIP-Seq
GSM2417087
preiPSC#1_H3K4me1_ChIP-Seq
GSM2417088
ESC_H3K4me1_ChIP-Seq
GSM2417089
MEF_H3K9ac_ChIP-Seq
GSM2417090
48h_H3K9ac_ChIP-Seq
GSM2417091
preiPSC#1_H3K9ac_ChIP-Seq
GSM2417092
ESC_H3K9ac_ChIP-Seq
GSM2417093
MEF_H3K27ac_ChIP-Seq
GSM2417094
48h_H3K27ac_ChIP-Seq
GSM2417095
preiPSC#1_H3K27ac_ChIP-Seq
GSM2417096
ESC_H3K27ac_ChIP-Seq
GSM2417097
MEF_H3K27me3_ChIP-Seq
GSM2417098
48h_H3K27me3_ChIP-Seq
GSM2417099
preiPSC#1_H3K27me3_ChIP-Seq
GSM2417100
ESC_H3K27me3_ChIP-Seq
GSM2417101
MEF_H3K79me2_ChIP-Seq
GSM2417102
48h_H3K79me2_ChIP-Seq
GSM2417103
preiPSC#1_H3K79me2_ChIP-Seq
GSM2417104
ESC_H3K79me2_ChIP-Seq
GSM2417105
MEF_H3K36me3_ChIP-Seq
GSM2417106
48h_H3K36me3_ChIP-Seq
GSM2417107
preiPSC#1_H3K36me3_ChIP-Seq
GSM2417108
ESC_H3K36me3_ChIP-Seq
GSM2417109
MEF_H3K9me3_ChIP-Seq
GSM2417110
48h_H3K9me3_ChIP-Seq
GSM2417111
preiPSC#1_H3K9me3_ChIP-Seq
GSM2417112
ESC_H3K9me3_ChIP-Seq
GSM2417113
MEF_H3.3_ChIP-Seq
GSM2417114
48h_H3.3_ChIP-Seq
GSM2417115
preiPSC#1_H3.3_ChIP-Seq
GSM2417116
ESC_H3.3_ChIP-Seq
GSM2417117
MEF_H3_ChIP-Seq
GSM2417118
48h_H3_ChIP-Seq
GSM2417119
preiPSC#1_H3_ChIP-Seq
GSM2417120
ESC_H3_ChIP-Seq
GSM2417121
MEF_Inputnative_MNase_ChIP-Seq
GSM2417122
48h_Inputnative_MNase_ChIP-Seq
GSM2417123
preiPSC#1_Inputnative_MNase_ChIP-Seq
GSM2417124
ESC_Inputnative_MNase_ChIP-Seq
GSM2417125
MEF_WCE_ChIP-Seq
GSM2417126
preiPSC#1_WCE_ChIP-Seq
GSM2417127
ESC_WCE_ChIP-Seq
GSM2417128
MEF_Klf4_endo_ChIP_seq
GSM2417129
MEF_cMyc_endo_ChIP_seq
GSM2417130
48h_Oct4_OSKM_ChIP_seq
GSM2417131
48h_Sox2_OSKM_ChIP_seq
GSM2417132
48h_Klf4_OSKM_ChIP_seq
GSM2417133
48h_cMyc_OSKM_ChIP_seq
GSM2417134
pre-iPSC#1_Oct4_ChIP_seq
GSM2417135
pre-iPSC#1_Sox2_ChIP_seq
GSM2417136
pre-iPSC#1_Klf4_ChIP_seq
GSM2417137
pre-iPSC#1_cMyc_ChIP_seq
GSM2417138
pre-iPSC#2_Oct4_ChIP_seq
GSM2417139
pre-iPSC#2_Sox2_ChIP_seq
GSM2417140
pre-iPSC#2_Klf4_ChIP_seq
GSM2417141
pre-iPSC#2_cMyc_ChIP_seq
GSM2417142
ESC_Oct4_ChIP_seq
GSM2417143
ESC_Sox2_ChIP_seq
GSM2417144
ESC_Klf4_ChIP_seq
GSM2417145
ESC_cMyc_ChIP_seq
GSM2417146
48h_Klf4_KpMX_ChIP-seq
GSM2417147
48h_Klf4_KtetO_ChIP-seq
GSM2417148
48h_H3K27ac_KtetO_ChIP-seq
GSM2417149
48h_Oct4_OpMX_ChIP-seq
GSM2417150
48h_Oct4_OtetO_ChIP-seq
GSM2417151
48h_endoK_OtetO_ChIP-seq
GSM2417152
48h_H3K27ac_OtetO_ChIP-seq
GSM2417153
48h_Sox2_SpMX_ChIP-seq
GSM2417154
48h_Sox2_StetO_ChIP-seq
GSM2417155
48h_endoK_StetO_ChIP-seq
GSM2417156
48h_Oct4_OKpMX_ChIP-seq
GSM2417157
48h_Klf4_OKpMX_ChIP-seq
GSM2417158
48h_Sox2_SKpMX_ChIP-seq
GSM2417159
48h_Klf4_SKpMX_ChIP-seq
GSM2417160
48h_Oct4_OSpMX_ChIP-seq
GSM2417161
48h_Sox2_OSpMX_ChIP-seq
GSM2417162
48h_endoKlf4_OSpMX_ChIP-seq
GSM2417163
48h_Oct4_OSKpMX_ChIP-seq
GSM2417164
48h_Sox2_OSKpMX_ChIP-seq
GSM2417165
48h_Klf4_OSKpMX_ChIP-seq
GSM2417166
MEF_p300_ChIP-Seq
GSM2417167
48h_p300_ChIP-Seq
GSM2417168
preiPSC#1_p300_ChIP-Seq
GSM2417169
ESC_p300_ChIP-Seq
GSM2417170
MEF_Hdac1_ChIP-Seq
GSM2417171
48h_Hdac1_ChIP-Seq
GSM2417172
preiPSC#1_Hdac1_ChIP-Seq
GSM2417173
ESC_Hdac1_ChIP-Seq
GSM2417174
MEF_Brg1_ChIP-Seq
GSM2417175
48h_Brg1_ChIP-Seq
GSM2417176
preiPSC#1_Brg1_ChIP-Seq
GSM2417177
ESC_Brg1_ChIP-Seq
GSM2417178
MEF_Fra1_ChIP-Seq
GSM2417179
48h_Fra1_ChIP-Seq
GSM2417180
MEF_Runx1_ChIP-Seq
GSM2417181
48h_Runx1_ChIP-Seq
GSM2417182
MEF_Cebpa_ChIP-Seq
GSM2417183
48h_Cebpa_ChIP-Seq
GSM2417184
MEF_Cebpb_ChIP-Seq
GSM2417185
48h_Cebpb_ChIP-Seq
GSM2417186
preiPSC#1_Cebpb_ChIP-Seq
GSM2417187
ESC_Nanog_ChIP-seq
GSM2417188
ESC_Esrrb_ChIP-seq
GSM2417189
48h_FlagFra1_OSKMFra1ChIP-Seq
GSM2417190
48h_Oct4_OSKMFra1ChIP-Seq
GSM2417191
48h_Klf4_OSKMFra1ChIP-Seq
GSM2417192
48h_Esrrb_OSKMEsrrbChIP-Seq
GSM2417193
48h_Oct4_OSKMEsrrbChIP-Seq
GSM2417194
48h_Klf4_OSKMEsrrbChIP-Seq
GSM2417195
48h_H3K27ac_OSKMEsrrbChIP-Seq
GSM2417196
MEF_repA_mRNA-Seq
GSM2417197
MEF_repB_mRNA-Seq
GSM2417198
MEF_repC_mRNA-Seq
GSM2417199
48h_OSKM_repA_mRNA-Seq
GSM2417200
48h_OSKM_repB_mRNA-Seq
GSM2417201
48h_OSKM_repC_mRNA-Seq
GSM2417202
preiPSC1_mRNA-Seq
GSM2417203
preiPSC2_repB_mRNA-Seq
GSM2417204
preiPSC2_repA_mRNA-Seq
GSM2417205
ESC_mRNA-Seq
GSM2417206
MEF_Oct4tetO_mRNA-Seq
GSM2417207
MEF_Sox2tetO_mRNA-Seq
GSM2417208
MEF_Klf4pMX_mRNA-Seq
GSM2417209
48h_OSKMFra1_mRNA-Seq
GSM2417210
48h_OSKMcJun_mRNA-Seq
GSM2417211
48h_OSKMEsrrb_repA_mRNA-Seq
GSM2417212
48h_OSKMEsrrb_repB_mRNA-Seq
GSM2417213
48h_OSKMEsrrb_repC_mRNA-Seq
GSM2417214
MEF_PE_mRNA-Seq
GSM2417215
48h_OSKM_PE_mRNA-Seq
GSM2417216
preiPSC1_PE_mRNA-Seq
GSM2417217
ESC_PE_mRNA-Seq
This SuperSeries is composed of the following SubSeries:
GSE90892
Cooperative binding of Oct4, Sox2, and Klf4 with stage-specific transcription factors orchestrates reprogramming [ATAC-seq]
GSE90893
Cooperative binding of Oct4, Sox2, and Klf4 with stage-specific transcription factors orchestrates reprogramming [ChIP-seq]
GSE90894
Cooperative binding of Oct4, Sox2, and Klf4 with stage-specific transcription factors orchestrates reprogramming [RNA-seq]
Relations
BioProject
PRJNA356288
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Format
SOFT formatted family file(s)
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TXT
Supplementary file
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Download
File type/resource
GSE90895_RAW.tar
5.6 Gb
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TAR (of BED, WIG)
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