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GEO accession:
Series GSE91376
Query DataSets for GSE91376
Status
Public on Dec 20, 2016
Title
Integrated genomic analyses of de novo pathways underlying atypical meningiomas
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by genome tiling array
Non-coding RNA profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28195122
Submission date
Dec 09, 2016
Last update date
May 15, 2019
Contact name
Akdes Serin Harmanci
Organization name
Yale University
Department
Departments of Neurosurgery and Genetics
Lab
Murat Gunel
Street address
300 Cedar Street TAC S330
City
New Haven
State/province
Connecticut
ZIP/Postal code
06510
Country
USA
Platforms (2)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL13534
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (144)
Less...
More...
GSM2421979
control_ChIP-Seq [CONTROL1]
GSM2421980
control_ChIP-Seq [CONTROL2]
GSM2421981
TRAF7/PIK3_ChIP-Seq [MN-1037]
GSM2421982
Hedgehog_ChIP-Seq [MN-1044]
GSM2421983
TRAF7/PIK3_ChIP-Seq [MN-105]
GSM2421984
TRAF7/KLF4_ChIP-Seq [MN-1066]
GSM2421985
TRAF7/PIK3_ChIP-Seq [MN-163]
GSM2421986
NF2/Chr22_ChIP-Seq [MN-169]
GSM2421987
NF2/Chr22_ChIP-Seq [MN-171]
GSM2421988
TRAF7/KLF4_ChIP-Seq [MN-191]
GSM2421989
TRAF7/KLF4_ChIP-Seq [MN-201]
GSM2421990
Hedgehog_ChIP-Seq [MN-24]
GSM2421991
TRAF7/KLF4_ChIP-Seq [MN-249]
GSM2421992
NF2/Chr22_ChIP-Seq [MN-288]
GSM2421993
NF2/Chr22_ChIP-Seq [MN-291]
GSM2421994
TRAF7/PIK3_ChIP-Seq [MN-292]
GSM2421995
NF2/Chr22_ChIP-Seq [MN-297]
GSM2421996
NF2/Chr22_ChIP-Seq [MN-54]
GSM2421997
Hedgehog_ChIP-Seq [MN-79]
GSM2421998
NF2/Chr22_ChIP-Seq [MN-97]
GSM2421999
control_INPUT [CONTROL1]
GSM2422000
control_INPUT [CONTROL2]
GSM2422001
TRAF7/PIK3_INPUT [MN-1037]
GSM2422002
Hedgehog_INPUT [MN-1044]
GSM2422003
TRAF7/PIK3_INPUT [MN-105]
GSM2422004
TRAF7/KLF4_INPUT [MN-1066]
GSM2422005
TRAF7/PIK3_INPUT [MN-163]
GSM2422006
NF2/Chr22_INPUT [MN-169]
GSM2422007
NF2/Chr22_INPUT [MN-171]
GSM2422008
TRAF7/KLF4_INPUT [MN-191]
GSM2422009
TRAF7/KLF4_INPUT [MN-201]
GSM2422010
Hedgehog_INPUT [MN-24]
GSM2422011
TRAF7/KLF4_INPUT [MN-249]
GSM2422012
NF2/Chr22_INPUT [MN-288]
GSM2422013
NF2/Chr22_INPUT [MN-291]
GSM2422014
TRAF7/PIK3_INPUT [MN-292]
GSM2422015
NF2/Chr22_INPUT [MN-297]
GSM2422016
NF2/Chr22_INPUT [MN-54]
GSM2422017
Hedgehog_INPUT [MN-79]
GSM2422018
NF2/Chr22_INPUT [MN-97]
GSM2422037
TRAF7/KLF4 [6969568038_R01C01]
GSM2422038
TRAF7/PIK3 [6969568038_R02C01]
GSM2422039
TRAF7 [6969568038_R04C01]
GSM2422040
Control [6969568038_R05C01]
GSM2422041
Control [6969568038_R06C01]
GSM2422042
NF2/Chr22 [6969568038_R01C02]
GSM2422043
TRAF7/PIK3 [6969568038_R02C02]
GSM2422044
NF2/Chr22 [6969568038_R03C02]
GSM2422045
TRAF7/KLF4 [6969568038_R04C02]
GSM2422046
TRAF7 [6969568038_R05C02]
GSM2422047
Control [6969568038_R06C02]
GSM2422048
NF2/Chr22 [6969568093_R01C01]
GSM2422049
NF2/Chr22 [6969568093_R02C01]
GSM2422050
TRAF7/KLF4 [6969568093_R03C01]
GSM2422051
TRAF7 [6969568093_R04C01]
GSM2422052
NF2/Chr22 [6969568093_R05C01]
GSM2422053
Hedgehog [6969568093_R06C01]
GSM2422054
NF2/Chr22/SMARCB1 [6969568093_R01C02]
GSM2422055
NF2/Chr22 [6969568093_R02C02]
GSM2422056
TRAF7/PIK3 [6969568093_R06C02]
GSM2422057
TRAF7/KLF4 [6969568012_R01C01]
GSM2422058
NF2/Chr22 [6969568012_R03C01]
GSM2422059
NF2/Chr22 [6969568012_R04C01]
GSM2422060
NF2/Chr22 [6969568012_R05C01]
GSM2422061
Hedgehog [6969568012_R01C02]
GSM2422062
TRAF7/KLF4 [6969568012_R02C02]
GSM2422063
NF2/Chr22 [6969568012_R03C02]
GSM2422064
NF2/Chr22 [6969568012_R04C02]
GSM2422065
NF2/Chr22 [6969568012_R05C02]
GSM2422066
NF2/Chr22 [6969568012_R06C02]
GSM2422067
POLR2A [6969568085_R02C01]
GSM2422068
NF2/Chr22 [6969568085_R03C01]
GSM2422069
NF2/Chr22 [6969568085_R04C01]
GSM2422070
NF2/Chr22 [6969568085_R05C01]
GSM2422071
NF2/Chr22 [6969568085_R06C01]
GSM2422072
NF2/Chr22/SMARCB1 [6969568085_R01C02]
GSM2422073
NF2/Chr22 [6969568085_R02C02]
GSM2422074
NF2/Chr22 [6969568085_R03C02]
GSM2422075
NF2/Chr22 [6969568085_R05C02]
GSM2422076
NF2/Chr22 [6969568085_R06C02]
GSM2422077
NF2/Chr22 [9702496149_R01C01]
GSM2422078
Hedgehog [9702496149_R02C01]
GSM2422079
POLR2A [9702496149_R03C01]
GSM2422080
NF2/Chr22/SMARCB1 [9702496149_R05C01]
GSM2422081
TRAF7/PIK3 [9702496149_R01C02]
GSM2422082
Hedgehog [9702496149_R02C02]
GSM2422083
TRAF7/PIK3 [9702496149_R03C02]
GSM2422084
POLR2A [9702496149_R04C02]
GSM2422085
NF2/Chr22 [9702496149_R05C02]
GSM2422086
Hedgehog [9702496149_R06C02]
GSM2422087
NF2/Chr22 [9702496158_R02C01]
GSM2422088
NF2/Chr22 [9702496158_R04C01]
GSM2422089
POLR2A [9702496158_R05C01]
GSM2422090
Hedgehog [9702496158_R06C01]
GSM2422091
NF2/Chr22/SMARCB1 [9702496158_R02C02]
GSM2422092
POLR2A [9702496158_R03C02]
GSM2422093
NF2/Chr22 [9702496158_R04C02]
GSM2422094
TRAF7/PIK3 [200109350018_R01C01]
GSM2422095
TRAF7/PIK3 [200109350018_R02C01]
GSM2422096
TRAF7/PIK3 [200109350018_R04C01]
GSM2432238
NF2_MN-171_H3k27me3_ChIPSEQ
GSM2432239
NF2_MN-54_H3k27me3_ChIPSEQ
GSM2432240
NF2_MN-97_H3k27me3_ChIPSEQ
GSM2432241
NF2_MN-171_H3k27me3_INPUT
GSM2432242
NF2_MN-54_H3k27me3_INPUT
GSM2432243
NF2_MN-97_H3k27me3_INPUT
GSM2432244
NonNF2_MN-105_H3k27me3_ChIPSEQ
GSM2432245
NonNF2_MN-249_H3k27me3_ChIPSEQ
GSM2432246
NonNF2_MN-26_H3k27me3_ChIPSEQ
GSM2432247
NonNF2_MN-105_H3k27me3_INPUT
GSM2432248
NonNF2_MN-249_H3k27me3_INPUT
GSM2432249
NonNF2_MN-26_H3k27me3_INPUT
GSM2453787
POLR2A_miRNA-seq [MN-12]
GSM2453788
NF2/Chr22_miRNA-seq [MN-41]
GSM2453789
NF2/Chr22_miRNA-seq [MN-47]
GSM2453790
NF2/Chr22/SMARCB1_miRNA-seq [MN-56]
GSM2453791
POLR2A_miRNA-seq [MN-60355]
GSM2453792
NF2/Chr22_miRNA-seq [MN-61027]
GSM2453793
NF2/Chr22_miRNA-seq [MN-61134]
GSM2453794
TRAF7/PIK3_miRNA-seq [MN-61471]
GSM2453795
NF2/Chr22_miRNA-seq [MN-61624]
GSM2453796
NF2/Chr22_miRNA-seq [MN-61887]
GSM2453797
NF2/Chr22_miRNA-seq [MN-62113]
GSM2453798
NF2/Chr22_miRNA-seq [MN-62203]
GSM2453799
NF2/Chr22_miRNA-seq [MN-62287]
GSM2453800
NF2/Chr22_miRNA-seq [MN-62292]
GSM2453801
NF2/Chr22/SMARCB1_miRNA-seq [MN-62296]
GSM2453802
NF2/Chr22_miRNA-seq [MN-62525]
GSM2453803
TRAF7/PIK3_miRNA-seq [MN-62677]
GSM2453804
TRAF7/chr22_miRNA-seq [MN-63338]
GSM2453805
NF2/Chr22_miRNA-seq [MN-63442]
GSM2453806
NF2/Chr22_miRNA-seq [MN-63525]
GSM2453807
NF2/Chr22_miRNA-seq [MN-63711]
GSM2453808
NF2/Chr22_miRNA-seq [MN-63811]
GSM2453809
NF2/Chr22_miRNA-seq [MN-64031]
GSM2453810
NF2/Chr22/SMARCB1_miRNA-seq [MN-64136]
GSM2453811
NF2/Chr22_miRNA-seq [MN-64167]
GSM2453812
POLR2A_miRNA-seq [MN-64273]
GSM2453813
NF2/Chr22_miRNA-seq [MN-64353]
GSM2453814
NF2/Chr22_miRNA-seq [MN-64530]
GSM2453815
NF2/Chr22_miRNA-seq [MN-64705]
GSM2453816
NF2/Chr22_miRNA-seq [MN-64760]
GSM2453817
NF2/Chr22_miRNA-seq [MN-64846]
GSM2453818
Hedgehog_miRNA-seq [MN-81172]
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE91372
Integrated genomic analyses of de novo pathways underlying atypical meningiomas [ChIP-Seq]
GSE91375
Integrated genomic analyses of de novo pathways underlying atypical meningiomas [methylation]
GSE92558
Integrated genomic analyses of de novo pathways underlying atypical meningiomas [H3k27me3 ChIP-Seq]
GSE93519
Integrated genomic analyses of de novo pathways underlying atypical meningiomas [miRNA-seq]
Relations
BioProject
PRJNA356864
Download family
Format
SOFT formatted family file(s)
SOFT
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MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE91376_RAW.tar
183.1 Mb
(http)
(custom)
TAR
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