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Series GSE92646 Query DataSets for GSE92646
Status Public on Apr 17, 2017
Title Gene expression in normal human epidermal keratinocytes treated with poly(I:C)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary In a rare example akin to organogenesis in adult mammals, large wounds in mice lead to de novo morphogenesis of hair follicles. It is still not fully clear what controls this process, known as Wound Induced Hair Neogenesis (WIHN). In other tissues, prostaglandin E2 (PGE2) is an important effector of regeneration and has been shown to stimulate the Wnt/beta-catenin pathway, which in turn is known to control WIHN. Previously, our group has demonstrated that noncoding dsRNA released during wounding is both necessary and sufficient to stimulate WIHN through TLR3. Here, we hypothesize that dsRNA similarly induces the beta-catenin pathway through PGE2. We find that WIHN levels correlate closely to Wnt7b production in vivo, and that dsRNA potently induces Wnt7b in a manner that requires prostaglandin-endoperoxide synthase 2 (Ptgs2). The Ptgs2 inhibitor celecoxib reduces dsRNA-induced WIHN and Wnt7b, and exogenous PGE2 can rescue WIHN and Wnt7b. These results highlight noncoding dsRNA as a novel upstream coordinator of prostaglandin and Wnt levels in regeneration.
We used microarrays to identify the human keratinocyte genes most upregulated or downregulated by poly(I:C)
 
Overall design Normal human epidermal keratinocytes were cultured in the presence or absence of poly(I:C) as described below. Total RNA was extracted and sent for microarray analysis.
 
Contributor(s) Zhu AS, Garza LA
Citation(s) 28392344
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 AR068280 Towards the clinical testing of dsRNA to promote wound induced hair neogenesis JOHNS HOPKINS UNIVERSITY Luis Andres Garza
Submission date Dec 20, 2016
Last update date Aug 23, 2018
Contact name Luis Andres Garza
E-mail(s) LAG@jhmi.edu
Phone 410-955-8662
Organization name Johns Hopkins School of Medicine
Department Dermatology
Lab Garza lab
Street address 1550 Orleans St. Suite 204 CRBII Koch
City Baltimore
State/province MD
ZIP/Postal code 21287
Country USA
 
Platforms (1)
GPL15207 [PrimeView] Affymetrix Human Gene Expression Array
Samples (2)
GSM2433933 NHEK_vehicle
GSM2433934 NHEK_poly(I:C)
Relations
BioProject PRJNA358226

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE92646_RAW.tar 4.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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