|
| Status |
Public on Jan 31, 2017 |
| Title |
Properties of STAT1 and IRF1 Enhancers and the Influence of SNPs |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by genome tiling array
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Contributor(s) |
Bremner R, Xu Z, Yu T, Huang K, Hassan M |
| Citation(s) |
28274199 |
| Submission date |
Jan 31, 2017 |
| Last update date |
Feb 18, 2019 |
| Contact name |
Rod Bremner |
| Organization name |
Mount Sinai Hospital
|
| Department |
Lunenfeld-Tanenbaum Research Institute
|
| Lab |
Bremner's lab
|
| Street address |
600 University Ave
|
| City |
Toronto |
| State/province |
ON |
| ZIP/Postal code |
M5G 1X5 |
| Country |
Canada |
| |
|
| Platforms (3) |
| GPL6673 |
Nimblegen human 16MB custom tiling array (HG17) design1 |
| GPL6674 |
Nimblegen human 16MB custom tiling array (HG17) design2 |
| GPL6884 |
Illumina HumanWG-6 v3.0 expression beadchip |
|
| Samples (24)
|
| GSM280433 |
16MB STAT1 chip-chip in 6 hours IFNg-treated human Hela cells-rep1 of 3 |
| GSM280444 |
16MB STAT1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep1 of 3 |
| GSM280629 |
16MB IRF1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep1 of 3 |
| GSM280630 |
16MB IRF1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep2 of 3 |
| GSM280639 |
16MB IRF1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep3 of 3 |
| GSM280640 |
16MB IRF1 chip-chip in 6 hours IFNg-treated human Hela cells-rep1 of 3 |
| GSM280661 |
16MB IRF1 chip-chip in 6 hours IFNg-treated human Hela cells-rep2 of 3 |
| GSM280662 |
16MB IRF1 chip-chip in 6 hours IFNg-treated human Hela cells-rep3 of 3 |
| GSM280663 |
16MB STAT1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep2 of 3 |
| GSM280664 |
16MB STAT1 chip-chip in 6 hours IFNg-untreated human Hela cells-rep3 of 3 |
| GSM280791 |
16MB STAT1 chip-chip in 6 hours IFNg-treated human Hela cells-rep2 of 3 |
| GSM280792 |
16MB STAT1 chip-chip in 6 hours IFNg-treated human Hela cells-rep3 of 3 |
| GSM1652355 |
SW-13-GFP-IFNI |
| GSM1652356 |
SW-13-GFP-IFNII |
| GSM1652357 |
SW-13-GFP-IFNIII |
| GSM1652358 |
SW-13-BRG1-IFNI |
| GSM1652359 |
SW-13-BRG1-IFNII |
| GSM1652360 |
SW-13-BRG1-IFNIII |
| GSM1652361 |
SW-13-GFP+IFNI |
| GSM1652362 |
SW-13-GFP+IFNII |
| GSM1652363 |
SW-13-GFP+IFNIII |
| GSM1652364 |
SW-13-BRG1+IFNI |
| GSM1652365 |
SW-13-BRG1+IFNII |
| GSM1652366 |
SW-13-BRG1+IFNIII |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE67626 |
The effect of BRG1 on the responsivness of IFNg Stimulated Genes |
| GSE94352 |
16MB binding of STAT1 and IRF1 transcription factors in IFNg treated and untreated HeLa cells using NimbleGen array |
|
| Relations |
| BioProject |
PRJNA369441 |
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