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Series GSE94811 Query DataSets for GSE94811
Status Public on Feb 14, 2019
Title The ALK downregulated target gene HBP1 and repressor of MYCN activity as synergistic target for combined PI3K/HDAC inhibition [microarray]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary ALK mutations occur in 10% of primary neuroblastoma and represent a major target for precision treatment. In combination with MYCN amplification, ALK mutations infer an ultra-high-risk phenotype with very poor prognosis. To anticipate to future precision drugging, a deeper understanding of the molecular consequences of constitutive ALK signaling and its relationship to MYCN activity in this aggressive pediatric tumor, will be essential to understand treatment responses and failure as well as to ensure improved design of drugging combinations. We show that mutant ALK downregulates the HMG-box transcription factor 1 (HBP1) through the PI3K-AKT-FOXO3a signaling axis. Interestingly, we also demonstrate that HBP1 is under control of MYCN, through negative regulation of the miR-17~92 cluster. Moreover, modulation of HBP1 in neuroblastoma negatively affect MYCN activity, including alleviating MYCN/PRC2 controlled gene repression. Combined targeting of PI3K and MYCN signaling induced strong synergistic blocking of tumor growth, thus offering potential for targeted therapeutic interventions.
 
Overall design Gene expression was measured in NGP HBP1 neuroblastoma cells upon lentiviral transduction with an HBP1 overexpression construct. This was performed for 2 biological replicates.
 
Contributor(s) Claeys S, De Preter K, Speleman F
Citation(s) 30538293
Submission date Feb 13, 2017
Last update date Jun 04, 2019
Contact name Shana Claeys
Organization name Center for Medical Genetics Ghent
Street address De Pintelaan 185
City Ghent
ZIP/Postal code 9000
Country Belgium
 
Platforms (1)
GPL14550 Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Probe Name Version)
Samples (4)
GSM2483546 NGP_HBP1virus_replicate1
GSM2483547 NGP_HBP1virus_replicate2
GSM2483548 NGP_parental_replicate1
This SubSeries is part of SuperSeries:
GSE95193 The ALK downregulated target gene HBP1 and repressor of MYCN activity as synergistic target for combined PI3K/HDAC inhibition
Relations
BioProject PRJNA374498

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE94811_RAW.tar 12.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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