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| Status |
Public on May 01, 2017 |
| Title |
Genome-wide transcriptional targets of KLF15 in human airway smooth muscle |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We previously demonstrated that the transcription factor, KLF15, is a glucocorticoid-regulated gene that represses primary human airway smooth muscle (ASM) proliferation. Here, we show that KLF15 also represses ASM hypertrophy. To uncover the mechanistic basis for these effects, we integrated transcriptome data from KLF15 over-expression with genome-wide analysis of RNA Polymerase II (RNAPII) and glucocorticoid receptor (GR) occupancy (i.e. ChIP-seq). This led us to identify PLCD1 as both a KLF15-regulated gene and a repressor of ASM hypertrophy.
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| Overall design |
Genome-wide transcriptional targets of KLF15 in human airway smooth muscle cells were determined by RNA-seq in cells transduced with a KLF15-expressing adenovirus (Ad-KLF15) compared to a control adenovirus (Ad-GFP).
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| Contributor(s) |
Sasse SK, Kadiyala V, Danhorn T, Panettieri RA Jr, Phang TL, Gerber AN |
| Citation(s) |
28375666 |
| Submission date |
Feb 27, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Anthony Gerber |
| E-mail(s) |
tgerber@alum.mit.edu
|
| Phone |
3032702783
|
| Organization name |
National Jewish Health
|
| Department |
Medicine
|
| Street address |
1400 Jackson St
|
| City |
Denver |
| State/province |
CO |
| ZIP/Postal code |
80238 |
| Country |
USA |
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| Platforms (1) |
| GPL17303 |
Ion Torrent Proton (Homo sapiens) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA376877 |
| SRA |
SRP100755 |
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