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Series GSE96727 Query DataSets for GSE96727
Status Public on Mar 16, 2019
Title mitoCPR - a surveillance pathway that protects mitochondria in response to mitochondrial import stress [yeast]
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Summary Mitochondrial functions are essential for cell viability and rely on protein import into the organelle. Physiological perturbations and disease conditions can lead to mitochondrial import defect. We find that in budding yeast, mitochondrial import defects result in activation of a surveillance mechanism, which we termed mitoCPR. The mitoCPR is aimed at ameliorating mitochondrial import and protecting mitochondria during import stress. This is mediated by the mitoCPR effector, Cis1, which associates with mitochondria to reduce the accumulation of mitochondrial preproteins at the organelle's surface. Clearance of preproteins depends on the AAA-ATPase Msp1 and the proteasome, suggesting that Cis1 facilitates the degradation of unimported proteins that accumulate at the mitochondrial surface. We further show that mitoCPR is critical for maintaining mitochondrial functions during mitochondrial import stress and provide evidence that it is an ancient, conserved mitochondrial protection mechanism.
 
Overall design Two replicates each of WT controls, Psd1_oe2 samples (overexpressing Psd1) and Psd1_oe_Pdr3_ko2 samples (overexpressing Psd1 with a Pdr3 deletion) were compared.
 
Contributor(s) Weidberg H, Amon A
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 16, 2017
Last update date May 15, 2019
Contact name Charles Arthur Whittaker
E-mail(s) charliew@mit.edu
Organization name Koch Institute
Street address 77 Mass Ave 76-189
City Cambridge
State/province MA
ZIP/Postal code 02152
Country USA
 
Platforms (1)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
Samples (6)
GSM2539052 WT2-7_rep1
GSM2539053 WT2-10_rep2
GSM2539054 Psd1_oe2-8_rep1
This SubSeries is part of SuperSeries:
GSE96728 mitoCPR - a surveillance pathway that protects mitochondria in response to mitochondrial import stress
Relations
BioProject PRJNA379468
SRA SRP102032

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE96727_yeast_count_table.txt.gz 91.9 Kb (ftp)(http) TXT
GSE96727_yeast_fpkm_table.txt.gz 163.0 Kb (ftp)(http) TXT
GSE96727_yeast_merged.gtf.gz 226.0 Kb (ftp)(http) GTF
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Raw data are available in SRA
Processed data are available on Series record

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