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Series GSE97588 Query DataSets for GSE97588
Status Public on May 31, 2018
Title Next Generation Sequencing Facilitates Quantitative Analysis of chromatin conformational interaction between MYC and PVT1 in MDA-MB-231, MCF7, HCT116 cancer cell line
Organism Homo sapiens
Experiment type Other
Summary MYC-PVT1 interaction is cell line specific
 
Overall design interactions were measeured UMI-4C by two technical replicates for two biological replicates (with 3 different anchor point, two primers for each anchor).
 
Contributor(s) Cho SW, Chang HY
Citation(s) 29731168
Submission date Apr 10, 2017
Last update date May 15, 2019
Contact name Howard Y. Chang
E-mail(s) howchang@stanford.edu
Phone 650-725-7022
Organization name Stanford
Lab Chang Lab
Street address 269 Campus Drive, CCSR 2130
City Stanford
State/province CALIFORNIA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL15520 Illumina MiSeq (Homo sapiens)
Samples (72)
GSM2572610 MYC primer F1 biological rep1 technical rep 1 in HCT116 cell line
GSM2572611 MYC primer F1 biological rep1 technical rep 2 in HCT116 cell line
GSM2572612 MYC primer F1 biological rep2 technical rep 1 in HCT116 cell line
This SubSeries is part of SuperSeries:
GSE97669 Promoter of lncRNA gene *PVT1* is a tumor suppressor DNA element
Relations
BioProject PRJNA382389
SRA SRP103780

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97588_RAW.tar 16.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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