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Series GSE98187 Query DataSets for GSE98187
Status Public on Jan 15, 2019
Title Flipping the switch on Sex-lethal expression: Sister of Sex-lethal antagonizes Sxl-dependent alternative splicing to maintain a male-specific gene expression pattern in Drosophila (RIP-Seq)
Organism Drosophila melanogaster
Experiment type Other
Summary In Drosophila female development is governed by a single RNA-binding protein, Sex lethal (Sxl), that controls the expression of key factors involved in dosage compensation, germline homeostasis and the establishment of female morphology and behaviour. Functional Sxl protein is only synthesized in female flies. Its expression is established in the pre-cellular, female embryo by an X-chromosome counting mechanism and maintained by a positive feedback loop with Sxl controlling alternative splicing of its own transcript. In male flies this feedback loop is not activated, keeping Sxl expression in the ‘off’ state. But what protects males against accidental triggering of the self-sustaining feedback loop and Sxl protein production snowballing out of control? Here we identify Sister of sex lethal (Ssx) as a protein that antagonizes Sxl in autoregulatory splicing by competition for the same RNA elements. Male flies mutant for ssx exhibit a low level of productive Sxl mRNA splicing and in cultured Drosophila cells, Sxl-induced changes in alternative splicing can be reverted by the expression of Ssx. In sum, this demonstrates that Ssx helps to establish a stable, male-specific gene expression pattern by protecting male flies against triggering Sxl expression.
 
Overall design Identification of Drosophila Sister of Sex-lethal (Ssx) bound RNAs
 
Contributor(s) Moschall R, Rossbach O, Lehmann G, Kullmann L, Eichner N, Strauss D, Strieder N, Meister G, Krahn M, Medenbach J
Citation(s) 30590805
Submission date Apr 25, 2017
Last update date May 15, 2019
Contact name Gerhard Lehmann
E-mail(s) gerhard.lehmann@vkl.uni-regensburg.de
Organization name University of Regensburg
Department Biochemistry 1
Street address Universitaetsstrasse 31
City Regensburg
ZIP/Postal code 93053
Country Germany
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (8)
GSM2589035 Input_ctrl
GSM2589036 SXL-flagIP 1
GSM2589037 SXL-flagIP 2
This SubSeries is part of SuperSeries:
GSE98189 Flipping the switch on Sex-lethal expression: Sister of Sex-lethal antagonizes Sxl-dependent alternative splicing to maintain a male-specific gene expression pattern in Drosophila
Relations
BioProject PRJNA384221
SRA SRP105201

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98187_DESeq_RIP_Sxl_Ssx.xlsx 3.8 Mb (ftp)(http) XLSX
GSE98187_DEseq_RIP_Sxl_and_Ssx_upregulated_genes.xlsx 480.7 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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