|
| Status |
Public on Sep 10, 2012 |
| Title |
LICR_ChipSeq_MEL_H3K4me1_immortalized |
| Sample type |
SRA |
| |
|
| Source name |
MEL
|
| Organism |
Mus musculus |
| Characteristics |
lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
age: immortalized
biomaterial_type: immortalized cell line
age: immortalized
biomaterial_type: immortalized cell line
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM002652
labversion: Pooled & filtered
softwareversion: MACS
strain: Unknown
strain description: Unknown strain origin
|
| Biomaterial provider |
Weissman lab
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
|
| |
|
| Submission date |
Sep 10, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (3) |
| GSE31039 |
Histone Modifications by ChIP-seq from ENCODE/LICR |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX185794 |
| BioSample |
SAMN01163812 |
| Named Annotation |
GSM1000073_mm9_wgEncodeLicrHistoneMelH3k04me1MImmortalC57bl6StdSig.bigWig |
