|
| Status |
Public on Sep 10, 2012 |
| Title |
LICR_ChipSeq_ES-Bruce4_H3K9ac_E0 |
| Sample type |
SRA |
| |
|
| Source name |
ES-Bruce4
|
| Organism |
Mus musculus |
| Characteristics |
lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: ES-Bruce4
cell organism: mouse
biomaterial_type: mouse embryonic stem cells
cell sex: M
antibody: H3K9ac
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K9ac
antibody targetdescription: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendorname: Abcam
antibody vendorid: ab4441
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM001683
labversion: Pooled & filtered
softwareversion: MACS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
|
| Biomaterial provider |
University of California, San Diego Transgenic Core and Embryonic Stem Cell
|
| Growth protocol |
ES-Bruce4_Ren_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
|
| |
|
| Submission date |
Sep 10, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (3) |
| GSE31039 |
Histone Modifications by ChIP-seq from ENCODE/LICR |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX185848 |
| BioSample |
SAMN01163866 |
| Named Annotation |
GSM1000127_mm9_wgEncodeLicrHistoneEsb4H3k09acME0C57bl6StdSig.bigWig |
